Factsheet for Solyc12g008770.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000910	Potato	cytosol	97.04	95.91
VIT_11s0016g02470.t01	Wine grape	cytosol	76.04	75.37
KRH49045	Soybean	cytosol	70.71	73.99
AT4G26180.1	Thale cress	cytosol	70.12	71.6
Bra026457.1-P	Field mustard	cytosol	70.71	71.56
CDX94361	Canola	cytosol	70.71	71.56
CDY68466	Canola	cytosol	70.41	71.47
TraesCS6D01G176300.3	Wheat	cytosol	67.75	68.36
TraesCS6B01G231800.3	Wheat	cytosol	67.75	68.36
TraesCS6A01G187900.2	Wheat	cytosol	67.46	68.06
HORVU6Hr1G042080.7	Barley	cytosol	67.16	67.56
KXG29836	Sorghum	cytosol, mitochondrion, plastid	66.27	66.67
Zm00001d016299_P001	Maize	cytosol, mitochondrion, plastid	65.98	66.57
GSMUA_Achr10P...	Banana	cytosol	68.05	66.28
TraesCS7A01G061900.2	Wheat	cytosol	64.79	65.37
TraesCS7D01G056700.1	Wheat	cytosol	66.27	65.31
GSMUA_Achr7P09310_001	Banana	cytosol	61.24	59.83
TraesCS4A01G428000.1	Wheat	mitochondrion	65.98	57.92
Os02t0226300-00	Rice	cytosol, mitochondrion, plastid	57.69	54.62
TraesCS4A01G427000.1	Wheat	mitochondrion	59.17	53.48
Solyc08g062860.2.1	Tomato	cytosol	54.14	53.35
Solyc01g095570.2.1	Tomato	cytosol	34.62	32.96
Solyc08g082020.2.1	Tomato	cytosol	34.62	32.77
Solyc10g011670.2.1	Tomato	cytosol	34.32	32.68
Solyc09g011360.2.1	Tomato	cytosol, peroxisome, plastid	29.88	28.45
Solyc12g099630.1.1	Tomato	cytosol	19.23	27.66
Solyc09g005250.2.1	Tomato	plastid	30.77	27.37
Solyc08g061090.2.1	Tomato	plastid	31.36	26.63
Solyc01g067070.2.1	Tomato	cytosol	26.04	26.59
Solyc03g123990.2.1	Tomato	cytosol	24.56	22.62
Solyc06g068720.2.1	Tomato	cytosol	31.95	21.6
Solyc04g056260.1.1	Tomato	cytosol, nucleus	25.74	20.42
Solyc05g051560.2.1	Tomato	nucleus	25.44	20.24
Solyc03g118090.2.1	Tomato	cytosol	29.88	20.12
Solyc04g074130.2.1	Tomato	cytosol	25.44	19.86

Protein Annotations

Gene3D:1.50.40.10	MapMan:24.2.13	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006810	GO:GO:0006839
GO:GO:0008150	GO:GO:0015217	GO:GO:0015228	GO:GO:0015866	GO:GO:0016020	GO:GO:0016021
GO:GO:0035349	GO:GO:0055085	GO:GO:0080121	GO:GO:0080122	GO:GO:1990559	InterPro:Graves_DC
InterPro:IPR018108	InterPro:IPR023395	UniProt:K4DBW5	InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf
PFAM:PF00153	PRINTS:PR00926	PRINTS:PR00928	PFscan:PS50920	PANTHER:PTHR24089	PANTHER:PTHR24089:SF245
SUPFAM:SSF103506	EnsemblPlantsGene:Solyc12g008770.1	EnsemblPlants:Solyc12g008770.1.1	UniParc:UPI00027696CC	:	:

Description

No Description!

Coordinates

chr12:+:2123672..2126297

Molecular Weight (calculated)

37242.4 Da

IEP (calculated)

9.996

GRAVY (calculated)

0.022

Length

338 amino acids

Sequence
(BLAST)

001: MAKQRDEREV WDGVIEGMPL FAKELIAGGV AGGFAKSAVA PLERIKILFQ TRQVEYRSLG LIGSFTKIAK TEGTLGFFRG NGASVARIVP YAALHYMAYE
101: EYRRWIIDGI PGVGRGPILD LVAGSFAGGT AVLFTYPLDL VRTKLAYQVV GSQKLNIQGI VAGEQVYKGI KDCFSKTYKE AGIKGLYRGV APSLYGIFPY
201: AGLKFYFYET MKSHVPKERK NDITIKLACG SVAGLLGQTF TYPLDVVRRQ MQVQRLSASN SHELKGTADT LVMILQKHGW KQLFSGLSLN YLKVVPSVAI
301: GFTVYDLMKA YLRVPSRDEA VVEVVTSNRD SQPSTLHS

Best Arabidopsis Sequence Match ( AT4G26180.1 )
(BLAST)

001: MAEGEEKNGI IDSIPLFAKE LIAGGVTGGI AKTAVAPLER IKILFQTRRD EFKRIGLVGS INKIGKTEGL MGFYRGNGAS VARIVPYAAL HYMAYEEYRR
101: WIIFGFPDTT RGPLLDLVAG SFAGGTAVLF TYPLDLVRTK LAYQVVGSAK TQVKAIPVEQ IIYRGIVDCF SRTYRESGAR GLYRGVAPSL YGIFPYAGLK
201: FYFYEEMKRH VPPEHKQDIS LKLVCGSVAG LLGQTLTYPL DVVRRQMQVE RLYSAVKEET RRGTMQTLFK IAREEGWKQL FSGLSINYLK VVPSVAIGFT
301: VYDIMKLHLR VPPREEPEAE AVTTRKRKVF T

Arabidopsis Description

COAC2Mitochondrial carrier protein CoAc2 [Source:UniProtKB/Swiss-Prot;Acc:F4JU70]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.