Factsheet for PGSC0003DMT400036927

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plasma membrane 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plasma membrane
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g118090.2.1	Tomato	cytosol	96.52	94.02
PGSC0003DMT400074454	Potato	plastid	30.06	82.12
KRH63894	Soybean	cytosol	71.57	74.79
KRH41046	Soybean	cytosol	74.85	74.39
KRH59718	Soybean	cytosol	75.26	73.6
KRH54061	Soybean	cytosol	71.57	73.53
GSMUA_AchrUn_...	Banana	cytosol	76.69	72.96
CDY14050	Canola	cytosol	69.73	72.86
Bra028702.1-P	Field mustard	cytosol	69.53	72.65
CDY55175	Canola	cytosol	69.53	72.65
GSMUA_Achr8P26070_001	Banana	cytosol	76.48	72.62
CDX70028	Canola	cytosol	58.9	72.54
AT5G51050.1	Thale cress	cytosol	73.82	72.49
AT5G07320.1	Thale cress	cytosol	69.73	71.19
CDX71683	Canola	cytosol	72.39	70.8
Bra009271.1-P	Field mustard	cytosol	62.37	70.77
Bra035722.1-P	Field mustard	cytosol	72.19	70.74
GSMUA_Achr5P05990_001	Banana	cytosol	74.23	70.62
CDY05832	Canola	cytosol	72.19	70.6
TraesCS7B01G278000.1	Wheat	cytosol, plastid	72.39	68.74
VIT_17s0000g00030.t01	Wine grape	plastid	76.89	68.61
Os06t0604500-01	Rice	nucleus	71.98	68.35
EER88619	Sorghum	cytosol, plastid	72.39	68.34
TraesCS7A01G376600.1	Wheat	cytosol, plastid	72.6	68.27
TraesCS7D01G372900.1	Wheat	cytosol, plastid	72.39	68.21
CDY00231	Canola	cytosol	65.85	67.51
CDX86953	Canola	cytosol	65.85	67.51
HORVU7Hr1G090020.9	Barley	mitochondrion	72.19	67.5
Bra019615.1-P	Field mustard	cytosol	65.64	67.3
AT5G61810.1	Thale cress	cytosol	65.44	66.95
KXG29744	Sorghum	plastid	70.35	65.15
Zm00001d053640_P001	Maize	plasma membrane	69.94	64.65
CDX98981	Canola	endoplasmic reticulum, golgi	55.83	64.08
Zm00001d046509_P002	Maize	plastid	71.17	63.04
Os02t0201500-00	Rice	plastid	70.55	59.48
PGSC0003DMT400049872	Potato	cytosol	25.56	35.21
PGSC0003DMT400000597	Potato	cytosol	25.36	34.93
PGSC0003DMT400062351	Potato	cytosol	21.88	30.4
PGSC0003DMT400000910	Potato	cytosol	20.45	29.24
PGSC0003DMT400021172	Potato	plastid	19.84	28.87
PGSC0003DMT400053564	Potato	cytosol, nucleus, plastid	22.7	27.89
PGSC0003DMT400087691	Potato	mitochondrion	9.2	26.95
PGSC0003DMT400030778	Potato	cytosol, peroxisome, plastid	18.4	23.68
PGSC0003DMT400016387	Potato	cytosol	20.65	23.33
PGSC0003DMT400043297	Potato	cytosol, plastid	19.63	22.8
PGSC0003DMT400023766	Potato	cytosol	16.36	22.6
PGSC0003DMT400004751	Potato	mitochondrion	7.36	22.5

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.50.40.10	MapMan:24.2.13	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	InterPro:IPR002048	InterPro:IPR018108	InterPro:IPR023395
UniProt:M1B4I2	InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf	PFAM:PF00153	PFAM:PF13499
PFAM:PF13833	EnsemblPlantsGene:PGSC0003DMG400014236	PGSC:PGSC0003DMG400014236	EnsemblPlants:PGSC0003DMT400036927	PRINTS:PR00926	ScanProsite:PS00018
PFscan:PS50222	PFscan:PS50920	PANTHER:PTHR24089	PANTHER:PTHR24089:SF454	SMART:SM00054	SUPFAM:SSF103506
SUPFAM:SSF47473	UniParc:UPI000296E245	:	:	:	:

Description

Succinate/fumarate mitochondrial transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400014236]

Coordinates

chr3:-:57683155..57687397

Molecular Weight (calculated)

54664.8 Da

IEP (calculated)

6.789

GRAVY (calculated)

-0.196

Length

489 amino acids

Sequence
(BLAST)

001: MAAKDRSGCC NPVKKPGPVS VDHVLSALRE TKEERDLRIR GLFSFFDSDN VGYLDSVKIE KGLFAMQIPA DYKFARELLT ECDKNKDGRV DYPEFRKYMD
101: DKELELYRIF QAIDVEHNGC ILPEELWDAL VKAGIQIDDE ELARFVEHVD KDNNGIITFE EWRNFLLLYP HEATLENIYR YWERVCLVDI GEQAVIPEGI
201: NKHVHTAKYF LAGGVAGATS RTATAPLDRL KVVLQVQTNR SSIGSTVREI WKDGGVLSFF RGNGLNVMKV APESAIRFYA YEILKNVIAH TKGEEQGDIG
301: ASGRFVAGGM AGAVAQTAIY PMDLVKTRLQ THASEGGKVP NLGKLSKDIW IQEGPRAFYK GLIPSLLGII PYSGIDLAVY ETLKDLSRIY ILQDREPGAL
401: VQLGCGTISG ALGATCVYPL QVIRTRMQAQ PTNTEAAYNG MSDVFRRTLQ HEGPRGFYKG LFPNLLKVVP AASITYIVYE YMKKSLDIK

Best Arabidopsis Sequence Match ( AT5G51050.1 )
(BLAST)

001: MSTTHVGLPT KMEATKSSKQ NCCNPVKKPG PVSIDHVLLA LRETREERDL RIRSLFSFFD SENVGYLDCA QIEKGLCALQ IPSGYKYAKE LFRVCDANRD
101: GRVDYHEFRR YMDDKELELY RIFQAIDVEH NGCISPEGLW DSLVKAGIEI KDEELARFVE HVDKDNDGII MFEEWRDFLL LYPHEATIEN IYHHWERVCL
201: VDIGEQAVIP EGISKHIKRS NYFIAGGIAG AASRTATAPL DRLKVLLQIQ KTDARIREAI KLIWKQGGVR GFFRGNGLNI VKVAPESAIK FYAYELFKNA
301: IGENMGEDKA DIGTTVRLFA GGMAGAVAQA SIYPLDLVKT RLQTYTSQAG VAVPRLGTLT KDILVHEGPR AFYKGLFPSL LGIIPYAGID LAAYETLKDL
401: SRTYILQDAE PGPLVQLGCG TISGALGATC VYPLQVVRTR MQAERARTSM SGVFRRTISE EGYRALYKGL LPNLLKVVPA ASITYMVYEA MKKSLELD

Arabidopsis Description

Mitochondrial substrate carrier family protein [Source:TAIR;Acc:AT5G51050]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.