Factsheet for PGSC0003DMT400087691

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	mitochondrion	52.1	64.93
CDY19928	Canola	cytosol	79.04	39.4
VIT_05s0020g01380.t01	Wine grape	cytosol	77.84	39.39
Bra036153.1-P	Field mustard	cytosol	78.44	39.1
KRH12112	Soybean	cytosol	76.65	39.02
KRH37122	Soybean	cytosol	76.65	39.02
KRH02242	Soybean	cytosol	75.45	38.53
AT5G48970.1	Thale cress	cytosol	77.84	38.35
CDY56673	Canola	cytosol	77.84	38.35
KRH50868	Soybean	cytosol	75.45	38.07
CDX85385	Canola	cytosol	76.65	37.98
CDX86261	Canola	cytosol	76.65	37.98
Os01t0934200-01	Rice	cytosol	68.86	34.23
AT3G21390.2	Thale cress	cytosol	73.05	34.17
TraesCS3D01G446800.1	Wheat	cytoskeleton, cytosol, plastid	67.66	33.63
TraesCS3A01G454400.1	Wheat	cytoskeleton, cytosol, plastid	67.07	33.33
KXG34072	Sorghum	cytosol	68.26	33.24
Bra037443.1-P	Field mustard	cytosol, mitochondrion, plastid	57.48	31.27
Zm00001d042213_P004	Maize	cytosol, plastid	70.66	30.57
HORVU3Hr1G098170.1	Barley	mitochondrion	67.07	29.47
TraesCS3B01G493000.1	Wheat	cytosol	67.66	27.9
Zm00001d011918_P002	Maize	cytosol	66.47	27.75
PGSC0003DMT400074454	Potato	plastid	25.75	24.02
Solyc12g099630.1.1	Tomato	cytosol	32.93	23.4
PGSC0003DMT400004751	Potato	mitochondrion	21.56	22.5
PGSC0003DMT400000597	Potato	cytosol	31.74	14.93
PGSC0003DMT400049872	Potato	cytosol	31.14	14.65
PGSC0003DMT400021172	Potato	plastid	29.34	14.58
PGSC0003DMT400023766	Potato	cytosol	28.14	13.28
PGSC0003DMT400000910	Potato	cytosol	26.35	12.87
PGSC0003DMT400062351	Potato	cytosol	25.75	12.22
PGSC0003DMT400053564	Potato	cytosol, nucleus, plastid	27.54	11.56
PGSC0003DMT400043297	Potato	cytosol, plastid	26.35	10.45
PGSC0003DMT400030778	Potato	cytosol, peroxisome, plastid	23.35	10.26
PGSC0003DMT400036927	Potato	cytosol	26.95	9.2
PGSC0003DMT400016387	Potato	cytosol	22.75	8.78

Protein Annotations

EnsemblPlants:PGSC0003DMT400087691	EnsemblPlantsGene:PGSC0003DMG400037262	Gene3D:1.50.40.10	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR018108	InterPro:IPR023395	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf	PANTHER:PTHR24089	PANTHER:PTHR24089:SF646
PFAM:PF00153	PFscan:PS50920	PGSC:PGSC0003DMG400037262	SUPFAM:SSF103506	UniParc:UPI0002966093	UniProt:M1DEC6
MapMan:24.2.13	:	:	:	:	:

Description

Mitochondrial deoxynucleotide carrier [Source:PGSC_GENE;Acc:PGSC0003DMG400037262]

Coordinates

chr12:+:60263725..60265664

Molecular Weight (calculated)

18684.6 Da

IEP (calculated)

9.713

GRAVY (calculated)

-0.049

Length

167 amino acids

Sequence
(BLAST)

001: MRSAFVDIFR ARGVPGLYAG LTPTLVEIAP YAGLQFGTYD TFKRWMKAWN RLRSSNSSQG DEFISSFQLF ICGLGSGTCA KAVCHPLDVV KKRFQIEGLQ
101: RHPRYGARLE ARAYKNMYDG LRRILLEEGW AGLYKGIVPS IVKAAPAGAV TFVAYEYTSD WLESILT

Best Arabidopsis Sequence Match ( AT5G48970.1 )
(BLAST)

001: MIPTTATVDD EPGQIKRALI DASAGAISGG VSRSVTSPLD VIKIRFQVQL EPTTSWGLVR GNLSGASKYT GMVQATKDIF REEGFRGFWR GNVPALLMVM
101: PYTSIQFTVL HKLKSFASGS TKTEDHIHLS PYLSFVSGAL AGCAATLGSY PFDLLRTILA SQGEPKVYPT MRSAFVDIIQ SRGIRGLYNG LTPTLVEIVP
201: YAGLQFGTYD MFKRWMMDWN RYKLSSKIPI NVDTNLSSFQ LFICGLGAGT SAKLVCHPLD VVKKRFQIEG LQRHPRYGAR VERRAYRNML DGLRQIMISE
301: GWHGLYKGIV PSTVKAAPAG AVTFVAYEFT SDWLESISW

Arabidopsis Description

Mitochondrial thiamine diphosphate carrier 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FI73]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.