Factsheet for VIT_05s0020g01380.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH37122	Soybean	cytosol	81.52	82.01
KRH02242	Soybean	cytosol	81.21	81.96
KRH50868	Soybean	cytosol	81.82	81.57
Solyc01g067070.2.1	Tomato	cytosol	81.52	81.27
KRH12112	Soybean	cytosol	80.3	80.79
Solyc12g099630.1.1	Tomato	cytosol	55.76	78.3
PGSC0003DMT400087691	Potato	mitochondrion	39.39	77.84
Os01t0934200-01	Rice	cytosol	78.48	77.08
AT5G48970.1	Thale cress	cytosol	78.79	76.7
CDX86261	Canola	cytosol	77.88	76.26
CDY19928	Canola	cytosol	77.27	76.12
Bra036153.1-P	Field mustard	cytosol	77.27	76.12
CDX85385	Canola	cytosol	77.58	75.96
KXG34072	Sorghum	cytosol	77.88	74.93
CDY56673	Canola	cytosol	76.97	74.93
GSMUA_Achr10P...	Banana	mitochondrion	30.0	73.88
TraesCS3A01G454400.1	Wheat	cytoskeleton, cytosol, plastid	74.85	73.51
TraesCS3D01G446800.1	Wheat	cytoskeleton, cytosol, plastid	74.85	73.51
AT3G21390.2	Thale cress	cytosol	75.76	70.03
Zm00001d042213_P004	Maize	cytosol, plastid	78.18	66.84
HORVU3Hr1G098170.1	Barley	mitochondrion	74.55	64.74
Zm00001d011918_P002	Maize	cytosol	75.15	62.0
Bra037443.1-P	Field mustard	cytosol, mitochondrion, plastid	57.27	61.56
TraesCS3B01G493000.1	Wheat	cytosol	74.55	60.74
VIT_02s0025g01180.t01	Wine grape	cytosol	31.82	29.66
VIT_15s0046g01290.t01	Wine grape	cytosol	31.21	29.1
VIT_04s0008g01060.t01	Wine grape	cytosol	27.88	26.74
VIT_08s0007g01280.t01	Wine grape	cytosol	26.97	26.49
VIT_11s0016g02470.t01	Wine grape	cytosol	25.76	24.93
VIT_13s0019g02440.t01	Wine grape	cytosol	26.97	24.65
VIT_11s0016g05110.t01	Wine grape	cytosol	29.09	24.0
VIT_08s0007g02230.t01	Wine grape	cytosol, mitochondrion, plastid	26.67	23.1
VIT_04s0008g05240.t01	Wine grape	cytosol	26.97	22.42
VIT_09s0054g00790.t01	Wine grape	cytosol	22.73	21.07
VIT_00s0665g00020.t01	Wine grape	plastid	23.94	19.13
VIT_14s0068g00890.t01	Wine grape	cytosol	27.88	18.81
VIT_18s0001g05620.t01	Wine grape	cytosol	24.85	18.51
VIT_10s0042g01030.t01	Wine grape	cytosol	6.67	17.89
VIT_17s0000g00030.t01	Wine grape	plastid	27.58	16.61

Protein Annotations

Gene3D:1.50.40.10	EntrezGene:100247816	wikigene:100247816	MapMan:24.2.13	ProteinID:CBI26066	ProteinID:CBI26066.3
UniProt:D7T6E5	EMBL:FN595749	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006810	GO:GO:0006839	GO:GO:0008150
GO:GO:0015234	GO:GO:0016020	GO:GO:0016021	GO:GO:0030974	GO:GO:0031305	GO:GO:0055085
GO:GO:0071934	InterPro:IPR018108	InterPro:IPR023395	EntrezGene:LOC100247816	wikigene:LOC100247816	InterPro:Mit_carrier
InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf	PFAM:PF00153	PRINTS:PR00926	PFscan:PS50920	PANTHER:PTHR24089
PANTHER:PTHR24089:SF628	SUPFAM:SSF103506	UniParc:UPI00015C7A16	ArrayExpress:VIT_05s0020g01380	EnsemblPlantsGene:VIT_05s0020g01380	EnsemblPlants:VIT_05s0020g01380.t01
unigene:Vvi.12409	RefSeq:XP_002272682	RefSeq:XP_002272682.1	RefSeq:XP_010649727.1	RefSeq:XP_010649728.1	RefSeq:XP_010649729.1
RefSeq:XP_010649730.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:-:3086220..3100199

Molecular Weight (calculated)

36406.1 Da

IEP (calculated)

9.486

GRAVY (calculated)

0.051

Length

330 amino acids

Sequence
(BLAST)

001: MEEPGQLKRA FIDAAAGAIA GGISRTVTSP LDVIKIRFQV QLEPTTSWAL LRRDVHGQSK YTGMLQATKD IFREEGLPGF WRGNVPALLM VMPYTAIQFT
101: VLHKLKTFAA GSSKSEDHIH LSPYLSFVSG ALAGCAATVG SYPFDLLRTL LASQGEPKVY PKMRSAFLDI IRTRGFQGLY AGLSPTLVEI IPYAGLQFGT
201: YDMFKRWTMA WNQYRSSNAN LTGTDSISSF QLFLCGFAAG TCAKAVCHPL DVVKKRFQIE GLPRDPKYGA RVEHRAYTNM YDALRQILLV EGWAGLYKGI
301: VPSIIKSAPA GAVTFVAYEF TSDWLESMVT

Best Arabidopsis Sequence Match ( AT5G48970.1 )
(BLAST)

001: MIPTTATVDD EPGQIKRALI DASAGAISGG VSRSVTSPLD VIKIRFQVQL EPTTSWGLVR GNLSGASKYT GMVQATKDIF REEGFRGFWR GNVPALLMVM
101: PYTSIQFTVL HKLKSFASGS TKTEDHIHLS PYLSFVSGAL AGCAATLGSY PFDLLRTILA SQGEPKVYPT MRSAFVDIIQ SRGIRGLYNG LTPTLVEIVP
201: YAGLQFGTYD MFKRWMMDWN RYKLSSKIPI NVDTNLSSFQ LFICGLGAGT SAKLVCHPLD VVKKRFQIEG LQRHPRYGAR VERRAYRNML DGLRQIMISE
301: GWHGLYKGIV PSTVKAAPAG AVTFVAYEFT SDWLESISW

Arabidopsis Description

Mitochondrial thiamine diphosphate carrier 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FI73]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.