Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86261 | Canola | cytosol | 93.81 | 94.36 |
| CDX85385 | Canola | cytosol | 93.51 | 94.07 |
| CDY19928 | Canola | cytosol | 92.63 | 93.73 |
| Bra036153.1-P | Field mustard | cytosol | 92.04 | 93.13 |
| CDY56673 | Canola | cytosol | 91.74 | 91.74 |
| KRH37122 | Soybean | cytosol | 76.7 | 79.27 |
| KRH02242 | Soybean | cytosol | 76.4 | 79.2 |
| KRH12112 | Soybean | cytosol | 76.4 | 78.96 |
| VIT_05s0020g01380.t01 | Wine grape | cytosol | 76.7 | 78.79 |
| KRH50868 | Soybean | cytosol | 76.7 | 78.55 |
| Solyc01g067070.2.1 | Tomato | cytosol | 76.4 | 78.25 |
| PGSC0003DMT400087691 | Potato | mitochondrion | 38.35 | 77.84 |
| Solyc12g099630.1.1 | Tomato | cytosol | 50.74 | 73.19 |
| Os01t0934200-01 | Rice | cytosol | 71.68 | 72.32 |
| KXG34072 | Sorghum | cytosol | 71.68 | 70.85 |
| Bra037443.1-P | Field mustard | cytosol, mitochondrion, plastid | 64.01 | 70.68 |
| TraesCS3A01G454400.1 | Wheat | cytoskeleton, cytosol, plastid | 69.62 | 70.24 |
| TraesCS3D01G446800.1 | Wheat | cytoskeleton, cytosol, plastid | 69.62 | 70.24 |
| AT3G21390.2 | Thale cress | cytosol | 71.98 | 68.35 |
| Zm00001d042213_P004 | Maize | cytosol, plastid | 72.86 | 63.99 |
| GSMUA_Achr10P... | Banana | mitochondrion | 25.07 | 63.43 |
| HORVU3Hr1G098170.1 | Barley | mitochondrion | 69.32 | 61.84 |
| Zm00001d011918_P002 | Maize | cytosol | 69.32 | 58.75 |
| TraesCS3B01G493000.1 | Wheat | cytosol | 69.62 | 58.27 |
| AT4G01100.2 | Thale cress | cytosol | 30.09 | 27.87 |
| AT1G14560.1 | Thale cress | cytosol | 26.55 | 27.19 |
| AT4G26180.1 | Thale cress | cytosol | 26.55 | 27.19 |
| AT3G55640.4 | Thale cress | plastid | 25.96 | 26.51 |
| AT2G37890.1 | Thale cress | cytosol | 25.66 | 25.82 |
| AT3G53940.1 | Thale cress | cytosol | 25.96 | 24.11 |
| AT4G32400.1 | Thale cress | cytosol | 26.25 | 22.7 |
| AT3G20240.1 | Thale cress | cytosol | 23.3 | 22.7 |
| AT3G51870.1 | Thale cress | plastid | 24.78 | 22.05 |
| AT5G01500.1 | Thale cress | cytosol | 25.07 | 20.48 |
| AT5G64970.1 | Thale cress | cytosol, mitochondrion, plastid | 23.01 | 18.22 |
| AT1G78180.1 | Thale cress | plastid | 21.53 | 17.46 |
| AT5G51050.1 | Thale cress | cytosol | 24.78 | 16.87 |
| AT5G61810.1 | Thale cress | cytosol | 23.6 | 16.74 |
| AT5G07320.1 | Thale cress | cytosol | 23.3 | 16.49 |
Protein Annotations
| Gene3D:1.50.40.10 | MapMan:24.2.13 | EntrezGene:834956 | UniProt:A0A178UM23 | ProteinID:AED95751.1 | EMBL:AK117372 |
| ProteinID:ANM68811.1 | ArrayExpress:AT5G48970 | EnsemblPlantsGene:AT5G48970 | RefSeq:AT5G48970 | TAIR:AT5G48970 | RefSeq:AT5G48970-TAIR-G |
| EnsemblPlants:AT5G48970.1 | TAIR:AT5G48970.1 | Unigene:At.43312 | ProteinID:BAB10321.1 | EMBL:BT006239 | GO:GO:0003674 |
| GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 |
| GO:GO:0005743 | GO:GO:0006810 | GO:GO:0006839 | GO:GO:0008150 | GO:GO:0015234 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0030974 | GO:GO:0031305 | GO:GO:0055085 | GO:GO:0071934 | GO:GO:0090422 |
| InterPro:IPR018108 | InterPro:IPR023395 | InterPro:Mit_carrier | InterPro:Mitochondrial_sb/sol_carrier | InterPro:Mt_carrier_dom_sf | RefSeq:NP_001330533.1 |
| RefSeq:NP_199708.1 | ProteinID:OAO94082.1 | PFAM:PF00153 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PRINTS:PR00926 | PFscan:PS50920 | PANTHER:PTHR24089 | PANTHER:PTHR24089:SF646 | UniProt:Q9FI73 |
| SUPFAM:SSF103506 | UniParc:UPI00000AC364 | : | : | : | : |
Description
Mitochondrial thiamine diphosphate carrier 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FI73]
Coordinates
chr5:-:19856830..19859763
Molecular Weight (calculated)
37495.5 Da
IEP (calculated)
9.926
GRAVY (calculated)
-0.005
Length
339 amino acids
Sequence
(BLAST)
(BLAST)
001: MIPTTATVDD EPGQIKRALI DASAGAISGG VSRSVTSPLD VIKIRFQVQL EPTTSWGLVR GNLSGASKYT GMVQATKDIF REEGFRGFWR GNVPALLMVM
101: PYTSIQFTVL HKLKSFASGS TKTEDHIHLS PYLSFVSGAL AGCAATLGSY PFDLLRTILA SQGEPKVYPT MRSAFVDIIQ SRGIRGLYNG LTPTLVEIVP
201: YAGLQFGTYD MFKRWMMDWN RYKLSSKIPI NVDTNLSSFQ LFICGLGAGT SAKLVCHPLD VVKKRFQIEG LQRHPRYGAR VERRAYRNML DGLRQIMISE
301: GWHGLYKGIV PSTVKAAPAG AVTFVAYEFT SDWLESISW
101: PYTSIQFTVL HKLKSFASGS TKTEDHIHLS PYLSFVSGAL AGCAATLGSY PFDLLRTILA SQGEPKVYPT MRSAFVDIIQ SRGIRGLYNG LTPTLVEIVP
201: YAGLQFGTYD MFKRWMMDWN RYKLSSKIPI NVDTNLSSFQ LFICGLGAGT SAKLVCHPLD VVKKRFQIEG LQRHPRYGAR VERRAYRNML DGLRQIMISE
301: GWHGLYKGIV PSTVKAAPAG AVTFVAYEFT SDWLESISW
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.