Factsheet for GSMUA_Achr10P02210_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
peroxisome 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400087691	Potato	mitochondrion	64.93	52.1
GSMUA_Achr8P22520_001	Banana	cytosol	79.85	32.33
VIT_05s0020g01380.t01	Wine grape	cytosol	73.88	30.0
Solyc01g067070.2.1	Tomato	cytosol	67.91	27.49
KRH02242	Soybean	cytosol	66.42	27.22
KRH37122	Soybean	cytosol	66.42	27.13
KRH12112	Soybean	cytosol	66.42	27.13
KRH50868	Soybean	cytosol	66.42	26.89
AT3G21390.2	Thale cress	cytosol	69.4	26.05
AT5G48970.1	Thale cress	cytosol	63.43	25.07
CDX85385	Canola	cytosol	62.69	24.93
CDX86261	Canola	cytosol	62.69	24.93
CDY56673	Canola	cytosol	62.69	24.78
Bra036153.1-P	Field mustard	cytosol	61.94	24.78
CDY19928	Canola	cytosol	61.94	24.78
Bra037443.1-P	Field mustard	cytosol, mitochondrion, plastid	40.3	17.59
GSMUA_Achr11P...	Banana	extracellular	9.7	12.87
GSMUA_Achr8P25070_001	Banana	endoplasmic reticulum, plasma membrane, plastid	25.37	11.97
GSMUA_Achr3P32000_001	Banana	cytosol	28.36	10.64
GSMUA_Achr6P03370_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	22.39	10.1
GSMUA_Achr7P24620_001	Banana	cytosol	26.87	10.08
GSMUA_Achr7P10070_001	Banana	cytosol	28.36	9.84
GSMUA_Achr2P06340_001	Banana	cytosol	26.12	9.78
GSMUA_Achr6P05150_001	Banana	cytosol, plastid, vacuole	27.61	9.2
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus	10.45	9.15
GSMUA_Achr10P...	Banana	cytosol	22.39	8.9
GSMUA_Achr8P26260_001	Banana	cytosol, peroxisome, plastid	22.39	8.88
GSMUA_Achr6P03740_001	Banana	cytosol	23.88	8.84
GSMUA_Achr4P24190_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	19.4	8.72
GSMUA_Achr6P30940_001	Banana	cytosol	23.13	8.64
GSMUA_Achr8P02430_001	Banana	cytosol	22.39	8.55
GSMUA_Achr10P...	Banana	cytosol	21.64	8.36
GSMUA_Achr2P14780_001	Banana	mitochondrion	20.9	8.09
GSMUA_Achr10P...	Banana	endoplasmic reticulum	26.87	8.05
GSMUA_Achr6P33950_001	Banana	plastid	23.13	7.75
GSMUA_Achr7P09310_001	Banana	cytosol	17.91	6.94
GSMUA_AchrUn_...	Banana	cytosol	24.63	6.42
GSMUA_Achr5P05990_001	Banana	cytosol	23.88	6.23
GSMUA_Achr8P26070_001	Banana	cytosol	23.88	6.21
Solyc12g099630.1.1	Tomato	cytosol	10.45	5.96
GSMUA_Achr10P...	Banana	cytosol	17.16	5.91
GSMUA_Achr9P03630_001	Banana	mitochondrion	15.67	5.57
GSMUA_Achr11P...	Banana	cytosol	4.48	4.76
GSMUA_Achr7P10000_001	Banana	mitochondrion	8.21	4.72
GSMUA_Achr8P25060_001	Banana	cytosol, mitochondrion, plastid	1.49	1.31

Protein Annotations

EnsemblPlants:GSMUA_Achr10P02210_001	EnsemblPlants:GSMUA_Achr10T02210_001	EnsemblPlantsGene:GSMUA_Achr10G02210_001	Gene3D:1.50.40.10	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR018108	InterPro:IPR023395	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf	PANTHER:PTHR24089
PANTHER:PTHR24089:SF628	PFAM:PF00153	PFscan:PS50920	SUPFAM:SSF103506	UniParc:UPI0002964903	UniProt:M0REP8
MapMan:24.2.13	:	:	:	:	:

Description

Putative Mitochondrial thiamine pyrophosphate carrier 1 [Source:GMGC_GENE;Acc:GSMUA_Achr10G02210_001]

Coordinates

chr10:-:6285845..6296108

Molecular Weight (calculated)

15356.6 Da

IEP (calculated)

9.388

GRAVY (calculated)

-0.067

Length

134 amino acids

Sequence
(BLAST)

001: MNCINYVSNV IKAWNRYRFS NISSMRPDDS LSSFQLFLCG FAAGTCAKAI CHPLDVVKKR FQIEGLRRHP KYGARVENQT YKNMYHALWQ ILHVEGWPGL
101: YKGIFPSLIK SAPAGAVTFV AYEYISDWLE TLLT

Best Arabidopsis Sequence Match ( AT5G48970.1 )
(BLAST)

001: MIPTTATVDD EPGQIKRALI DASAGAISGG VSRSVTSPLD VIKIRFQVQL EPTTSWGLVR GNLSGASKYT GMVQATKDIF REEGFRGFWR GNVPALLMVM
101: PYTSIQFTVL HKLKSFASGS TKTEDHIHLS PYLSFVSGAL AGCAATLGSY PFDLLRTILA SQGEPKVYPT MRSAFVDIIQ SRGIRGLYNG LTPTLVEIVP
201: YAGLQFGTYD MFKRWMMDWN RYKLSSKIPI NVDTNLSSFQ LFICGLGAGT SAKLVCHPLD VVKKRFQIEG LQRHPRYGAR VERRAYRNML DGLRQIMISE
301: GWHGLYKGIV PSTVKAAPAG AVTFVAYEFT SDWLESISW

Arabidopsis Description

Mitochondrial thiamine diphosphate carrier 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FI73]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.