Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86261 | Canola | cytosol | 99.7 | 99.7 |
| CDY19928 | Canola | cytosol | 94.36 | 94.93 |
| AT5G48970.1 | Thale cress | cytosol | 94.07 | 93.51 |
| CDY56673 | Canola | cytosol | 93.47 | 92.92 |
| KRH37122 | Soybean | cytosol | 77.15 | 79.27 |
| KRH12112 | Soybean | cytosol | 76.85 | 78.96 |
| KRH02242 | Soybean | cytosol | 76.26 | 78.59 |
| KRH50868 | Soybean | cytosol | 76.85 | 78.25 |
| VIT_05s0020g01380.t01 | Wine grape | cytosol | 75.96 | 77.58 |
| PGSC0003DMT400087691 | Potato | mitochondrion | 37.98 | 76.65 |
| Solyc01g067070.2.1 | Tomato | cytosol | 74.78 | 76.13 |
| Solyc12g099630.1.1 | Tomato | cytosol | 50.74 | 72.77 |
| Os01t0934200-01 | Rice | cytosol | 72.11 | 72.32 |
| Bra037443.1-P | Field mustard | cytosol, mitochondrion, plastid | 65.28 | 71.66 |
| KXG34072 | Sorghum | cytosol | 71.22 | 69.97 |
| TraesCS3A01G454400.1 | Wheat | cytoskeleton, cytosol, plastid | 69.14 | 69.35 |
| TraesCS3D01G446800.1 | Wheat | cytoskeleton, cytosol, plastid | 69.14 | 69.35 |
| Zm00001d042213_P004 | Maize | cytosol, plastid | 72.4 | 63.21 |
| GSMUA_Achr10P... | Banana | mitochondrion | 24.93 | 62.69 |
| HORVU3Hr1G098170.1 | Barley | mitochondrion | 68.84 | 61.05 |
| Zm00001d011918_P002 | Maize | cytosol | 68.84 | 58.0 |
| TraesCS3B01G493000.1 | Wheat | cytosol | 69.14 | 57.53 |
| CDX71722 | Canola | cytosol | 31.45 | 31.36 |
| CDY11371 | Canola | cytosol | 31.16 | 30.97 |
| CDX68843 | Canola | cytosol | 11.87 | 30.53 |
| CDY01954 | Canola | mitochondrion | 17.8 | 30.46 |
| CDY48505 | Canola | cytosol | 30.56 | 29.43 |
| CDY07175 | Canola | cytosol | 30.56 | 29.43 |
| CDX91877 | Canola | cytosol | 30.56 | 29.18 |
| CDX74363 | Canola | cytosol | 30.56 | 29.18 |
| CDY45268 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 27.3 | 28.13 |
| CDX84024 | Canola | cytosol | 27.3 | 27.96 |
| CDY66909 | Canola | cytosol, mitochondrion, plastid | 10.09 | 27.87 |
| CDX96850 | Canola | cytosol | 27.3 | 27.79 |
| CDY40244 | Canola | plastid | 27.3 | 27.46 |
| CDX70930 | Canola | cytosol | 15.73 | 27.32 |
| CDX94361 | Canola | cytosol | 27.0 | 27.25 |
| CDY07764 | Canola | plastid | 27.3 | 27.06 |
| CDY59491 | Canola | cytosol | 27.3 | 27.06 |
| CDY68466 | Canola | cytosol | 26.41 | 26.73 |
| CDX93344 | Canola | plastid | 27.3 | 26.67 |
| CDY18420 | Canola | plastid | 27.3 | 26.67 |
| CDY67915 | Canola | cytosol | 19.58 | 26.19 |
| CDX76183 | Canola | cytosol | 27.0 | 26.0 |
| CDY13155 | Canola | cytosol | 27.0 | 26.0 |
| CDY41199 | Canola | plastid | 27.0 | 25.28 |
| CDX97455 | Canola | plastid | 10.98 | 24.5 |
| CDX68841 | Canola | cytosol | 26.71 | 23.87 |
| CDX75241 | Canola | cytoskeleton, cytosol, nucleus | 26.71 | 23.56 |
| CDY11524 | Canola | cytosol | 26.71 | 22.61 |
| CDX76755 | Canola | cytosol | 26.41 | 22.42 |
| CDY29805 | Canola | cytosol | 23.15 | 22.41 |
| CDY25400 | Canola | cytosol, plastid | 23.15 | 22.41 |
| CDX95305 | Canola | plastid | 24.93 | 22.05 |
| CDY23168 | Canola | plastid | 24.93 | 22.05 |
| CDX82257 | Canola | cytosol | 22.55 | 21.84 |
| CDX80771 | Canola | cytosol, plastid | 25.52 | 21.29 |
| CDY36050 | Canola | cytosol, plastid | 21.96 | 21.26 |
| CDY11199 | Canola | plastid | 25.52 | 21.23 |
| CDX68026 | Canola | plastid | 22.55 | 19.14 |
| CDX79251 | Canola | plastid | 22.55 | 19.1 |
| CDY14527 | Canola | plastid | 22.55 | 18.23 |
| CDY08834 | Canola | plastid | 22.55 | 18.18 |
| CDY31292 | Canola | cytosol | 18.4 | 17.71 |
| CDY00231 | Canola | cytosol | 24.33 | 17.19 |
| CDX86953 | Canola | cytosol | 24.33 | 17.19 |
| CDY55175 | Canola | cytosol | 23.74 | 17.09 |
| CDY14050 | Canola | cytosol | 23.74 | 17.09 |
| CDX70028 | Canola | cytosol | 19.88 | 16.88 |
| CDX71683 | Canola | cytosol | 24.93 | 16.8 |
| CDY05832 | Canola | cytosol | 24.93 | 16.8 |
| CDY33993 | Canola | plastid | 16.91 | 15.97 |
| CDY39471 | Canola | cytosol | 17.21 | 14.46 |
| CDX98981 | Canola | endoplasmic reticulum, golgi | 18.1 | 14.32 |
Protein Annotations
| EnsemblPlants:CDX85385 | EnsemblPlantsGene:GSBRNA2T00143063001 | Gene3D:1.50.40.10 | GO:A0A078D863 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0055085 | InterPro:IPR018108 | InterPro:IPR023395 | InterPro:Mit_carrier | InterPro:Mitochondrial_sb/sol_carrier | InterPro:Mt_carrier_dom_sf |
| PANTHER:PTHR24089 | PANTHER:PTHR24089:SF646 | PFAM:PF00153 | PFscan:PS50920 | PRINTS:PR00926 | ProteinID:CDX85385 |
| ProteinID:CDX85385.1 | SUPFAM:SSF103506 | UniParc:UPI0004EF3C7D | MapMan:24.2.13 | : | : |
Description
BnaC07g26960D
Coordinates
chrLK031841:-:1496523..1498787
Molecular Weight (calculated)
37280.1 Da
IEP (calculated)
9.962
GRAVY (calculated)
-0.044
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTEAVDDP GQIKRALIDA SAGAISGGVS RTVTSPLDVI KIRFQVQLEP TSSWSVVRGN LSGASKYTGM VQATKDIFRE EGFRGFWRGN VPALLMVMPY
101: TSIQFTVLHK LKSFASGSTK TEDHMHLSPY LSFVSGALAG CAATLGSYPF DLLRTILASQ GEPKVYPTMR SAFFDIIKSR GIRGLYNGLT PTLVEIVPYA
201: GLQFGTYDMF KRWMMDWNRR MLSSNNPINV DTNLSSFQLF VCGLGAGTSA KLVCHPLDVV KKRFQIEGLQ RHPRYGARVE RRAYRNMLDG LKQILMSEGW
301: HGLYKGIVPS TVKAAPAGAV TFVAYEFTSD WLESISW
101: TSIQFTVLHK LKSFASGSTK TEDHMHLSPY LSFVSGALAG CAATLGSYPF DLLRTILASQ GEPKVYPTMR SAFFDIIKSR GIRGLYNGLT PTLVEIVPYA
201: GLQFGTYDMF KRWMMDWNRR MLSSNNPINV DTNLSSFQLF VCGLGAGTSA KLVCHPLDVV KKRFQIEGLQ RHPRYGARVE RRAYRNMLDG LKQILMSEGW
301: HGLYKGIVPS TVKAAPAGAV TFVAYEFTSD WLESISW
001: MIPTTATVDD EPGQIKRALI DASAGAISGG VSRSVTSPLD VIKIRFQVQL EPTTSWGLVR GNLSGASKYT GMVQATKDIF REEGFRGFWR GNVPALLMVM
101: PYTSIQFTVL HKLKSFASGS TKTEDHIHLS PYLSFVSGAL AGCAATLGSY PFDLLRTILA SQGEPKVYPT MRSAFVDIIQ SRGIRGLYNG LTPTLVEIVP
201: YAGLQFGTYD MFKRWMMDWN RYKLSSKIPI NVDTNLSSFQ LFICGLGAGT SAKLVCHPLD VVKKRFQIEG LQRHPRYGAR VERRAYRNML DGLRQIMISE
301: GWHGLYKGIV PSTVKAAPAG AVTFVAYEFT SDWLESISW
101: PYTSIQFTVL HKLKSFASGS TKTEDHIHLS PYLSFVSGAL AGCAATLGSY PFDLLRTILA SQGEPKVYPT MRSAFVDIIQ SRGIRGLYNG LTPTLVEIVP
201: YAGLQFGTYD MFKRWMMDWN RYKLSSKIPI NVDTNLSSFQ LFICGLGAGT SAKLVCHPLD VVKKRFQIEG LQRHPRYGAR VERRAYRNML DGLRQIMISE
301: GWHGLYKGIV PSTVKAAPAG AVTFVAYEFT SDWLESISW
Arabidopsis Description
Mitochondrial thiamine diphosphate carrier 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FI73]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.