CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96850	Canola	cytosol	99.7	99.09
CDY45268	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	93.62	94.19
AT1G14560.1	Thale cress	cytosol	94.53	93.96
CDY67915	Canola	cytosol	57.45	75.0
VIT_04s0008g01060.t01	Wine grape	cytosol	73.86	70.64
PGSC0003DMT400021172	Potato	plastid	68.69	67.26
Os01t0571000-02	Rice	cytosol, peroxisome, plastid	69.0	66.76
Solyc08g062860.2.1	Tomato	cytosol	69.3	66.47
TraesCS3D01G209300.1	Wheat	plastid	68.09	66.08
TraesCS3A01G206300.1	Wheat	plastid	68.09	66.08
HORVU3Hr1G049720.4	Barley	cytosol, peroxisome, plastid	68.09	66.08
EES00940	Sorghum	plastid	68.09	65.88
TraesCS3B01G238400.1	Wheat	cytosol, plastid, vacuole	47.11	65.4
Zm00001d011226_P002	Maize	plastid	67.17	65.0
Os01t0708900-01	Rice	cytosol, extracellular, peroxisome	66.57	64.99
KRH61524	Soybean	cytosol	66.87	64.9
KRH52207	Soybean	cytosol	66.57	64.79
GSMUA_Achr8P26260_001	Banana	cytosol, peroxisome, plastid	66.57	64.79
Zm00001d011697_P001	Maize	peroxisome	65.35	64.76
TraesCS3D01G251700.1	Wheat	cytosol, mitochondrion, plastid	66.26	64.69
TraesCS3A01G251300.1	Wheat	cytosol, mitochondrion, plastid	66.26	64.69
TraesCS3B01G280800.1	Wheat	cytosol, mitochondrion, plastid	66.26	64.69
EES01355	Sorghum	extracellular	65.05	63.69
CDY68466	Canola	cytosol	55.93	55.26
HORVU3Hr1G066850.4	Barley	mitochondrion	57.75	55.07
CDX94361	Canola	cytosol	55.62	54.79
CDY01954	Canola	mitochondrion	22.49	37.56
CDX71722	Canola	cytosol	37.39	36.39
CDY11371	Canola	cytosol	37.39	36.28
CDY07175	Canola	cytosol	37.39	35.14
CDY48505	Canola	cytosol	37.39	35.14
CDX74363	Canola	cytosol	37.69	35.13
CDX91877	Canola	cytosol	37.69	35.13
CDY66909	Canola	cytosol, mitochondrion, plastid	12.46	33.61
CDY07764	Canola	plastid	33.13	32.06
CDY59491	Canola	cytosol	32.83	31.76
CDX93344	Canola	plastid	32.22	30.72
CDX68843	Canola	cytosol	12.16	30.53
CDY40244	Canola	plastid	31.0	30.45
CDY18420	Canola	plastid	31.91	30.43
CDX70930	Canola	cytosol	17.63	29.9
CDY41199	Canola	plastid	31.0	28.33
CDY13155	Canola	cytosol	29.48	27.71
CDY19928	Canola	cytosol	27.96	27.46
CDX76183	Canola	cytosol	29.18	27.43
CDX86261	Canola	cytosol	27.96	27.3
CDX85385	Canola	cytosol	27.96	27.3
CDY56673	Canola	cytosol	27.96	27.14
CDX68841	Canola	cytosol	29.48	25.73
CDX95305	Canola	plastid	29.48	25.46
CDY23168	Canola	plastid	29.48	25.46
CDX75241	Canola	cytoskeleton, cytosol, nucleus	29.18	25.13
CDX76755	Canola	cytosol	29.48	24.43
CDY11524	Canola	cytosol	29.48	24.37
CDX97455	Canola	plastid	10.94	23.84
CDX80771	Canola	cytosol, plastid	29.18	23.76
CDY11199	Canola	plastid	29.18	23.7
CDX68026	Canola	plastid	28.27	23.43
CDX79251	Canola	plastid	28.27	23.37
CDY25400	Canola	cytosol, plastid	24.01	22.7
CDX82257	Canola	cytosol	24.01	22.7
CDY36050	Canola	cytosol, plastid	24.01	22.7
CDY29805	Canola	cytosol	24.01	22.7
CDY31292	Canola	cytosol	23.1	21.71
CDY00231	Canola	cytosol	31.31	21.59
CDY55175	Canola	cytosol	30.7	21.58
CDX70028	Canola	cytosol	25.84	21.41
CDX86953	Canola	cytosol	31.0	21.38
CDY14050	Canola	cytosol	30.4	21.37
CDY14527	Canola	plastid	27.05	21.34
CDY08834	Canola	plastid	27.05	21.29
CDY05832	Canola	cytosol	30.4	20.0
CDX71683	Canola	cytosol	30.4	20.0
CDX98981	Canola	endoplasmic reticulum, golgi	23.4	18.08
CDY33993	Canola	plastid	19.45	17.93
CDY39471	Canola	cytosol	14.89	12.22

Protein Annotations

EnsemblPlants:CDX84024	EnsemblPlantsGene:GSBRNA2T00139840001	Gene3D:1.50.40.10	GO:A0A078D6Q4	GO:GO:0006810	GO:GO:0008150
GO:GO:0055085	InterPro:IPR018108	InterPro:IPR023395	InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf
PANTHER:PTHR24089	PANTHER:PTHR24089:SF617	PFAM:PF00153	PFscan:PS50920	PRINTS:PR00926	ProteinID:CDX84024
ProteinID:CDX84024.1	SEG:seg	SUPFAM:SSF103506	UniParc:UPI0004EC499B	MapMan:24.2.13	:

Description

BnaC08g16210D

Coordinates

chrLK031834:-:1789697..1792041

Molecular Weight (calculated)

35865.6 Da

IEP (calculated)

9.854

GRAVY (calculated)

-0.014

Length

329 amino acids

Sequence
(BLAST)

001: MGSSQGSTLS ADVMSLVDTL PVLAKTLIAG GVAGAVAKTA VAPLERIKIL LQTRTNDFLG VSQSLKKVLQ CDGPLGFYKG NGASVIRIIP YAALHYMTYE
101: VYRDWILENN LPLGSGPVVD LVAGSAAGGT AVLCTYPLDL ARTKLAYQVS DASQSFRGGA NGVYRQHAYS GIKEVLSMAY KEAGPRGLYR GIGPTLIGIL
201: PYAGLKFYIY EELKRHVPEE HQNSVRMHLP CGALAGLFGQ TLTYPLDVVR RQMQVENLQP MTSDGSNKRY KNTFDGLNTI VRTQGWRQLF AGLSINYIKI
301: VPSVAIGFTV YESMKSWLRI PPRERSKPA

Best Arabidopsis Sequence Match ( AT1G14560.1 )
(BLAST)

001: MGSSQGSTLS ADVMSLVDTL PVLAKTLIAG GAAGAIAKTA VAPLERIKIL LQTRTNDFKT LGVSQSLKKV LQFDGPLGFY KGNGASVIRI IPYAALHYMT
101: YEVYRDWILE KNLPLGSGPI VDLVAGSAAG GTAVLCTYPL DLARTKLAYQ VSDTRQSLRG GANGFYRQPT YSGIKEVLAM AYKEGGPRGL YRGIGPTLIG
201: ILPYAGLKFY IYEELKRHVP EEHQNSVRMH LPCGALAGLF GQTITYPLDV VRRQMQVENL QPMTSEGNNK RYKNTFDGLN TIVRTQGWKQ LFAGLSINYI
301: KIVPSVAIGF TVYESMKSWM RIPPRERSKP A

Arabidopsis Description

COAC1Mitochondrial carrier protein CoAc1 [Source:UniProtKB/Swiss-Prot;Acc:F4HW79]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.