CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19928	Canola	cytosol	97.05	98.21
CDX86261	Canola	cytosol	93.22	93.77
CDX85385	Canola	cytosol	92.92	93.47
AT5G48970.1	Thale cress	cytosol	91.74	91.74
PGSC0003DMT400087691	Potato	mitochondrion	38.35	77.84
KRH02242	Soybean	cytosol	74.93	77.68
KRH12112	Soybean	cytosol	74.93	77.44
KRH37122	Soybean	cytosol	74.93	77.44
KRH50868	Soybean	cytosol	75.52	77.34
VIT_05s0020g01380.t01	Wine grape	cytosol	74.93	76.97
Solyc01g067070.2.1	Tomato	cytosol	74.63	76.44
Solyc12g099630.1.1	Tomato	cytosol	51.33	74.04
Os01t0934200-01	Rice	cytosol	71.39	72.02
KXG34072	Sorghum	cytosol	71.09	70.26
TraesCS3A01G454400.1	Wheat	cytoskeleton, cytosol, plastid	68.73	69.35
TraesCS3D01G446800.1	Wheat	cytoskeleton, cytosol, plastid	68.73	69.35
Zm00001d042213_P004	Maize	cytosol, plastid	71.98	63.21
GSMUA_Achr10P...	Banana	mitochondrion	24.78	62.69
HORVU3Hr1G098170.1	Barley	mitochondrion	68.44	61.05
Zm00001d011918_P002	Maize	cytosol	69.03	58.5
TraesCS3B01G493000.1	Wheat	cytosol	68.73	57.53
CDX68843	Canola	cytosol	12.09	31.3
CDX71722	Canola	cytosol	30.68	30.77
CDY11371	Canola	cytosol	30.38	30.38
CDY01954	Canola	mitochondrion	17.4	29.95
CDY07175	Canola	cytosol	29.5	28.57
CDY48505	Canola	cytosol	29.5	28.57
CDX91877	Canola	cytosol	29.5	28.33
CDX74363	Canola	cytosol	29.5	28.33
CDY45268	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	27.14	28.13
CDX84024	Canola	cytosol	27.14	27.96
CDX96850	Canola	cytosol	27.14	27.79
CDX70930	Canola	cytosol	15.63	27.32
CDY40244	Canola	plastid	26.84	27.16
CDY59491	Canola	cytosol	27.14	27.06
CDY07764	Canola	plastid	27.14	27.06
CDX94361	Canola	cytosol	26.55	26.95
CDY68466	Canola	cytosol	26.25	26.73
CDY18420	Canola	plastid	27.14	26.67
CDX93344	Canola	plastid	27.14	26.67
CDY13155	Canola	cytosol	27.14	26.29
CDY66909	Canola	cytosol, mitochondrion, plastid	9.44	26.23
CDX76183	Canola	cytosol	26.84	26.0
CDX68841	Canola	cytosol	28.61	25.73
CDY67915	Canola	cytosol	18.88	25.4
CDX75241	Canola	cytoskeleton, cytosol, nucleus	28.61	25.39
CDY41199	Canola	plastid	26.55	25.0
CDY11524	Canola	cytosol	28.91	24.62
CDX76755	Canola	cytosol	28.61	24.43
CDX97455	Canola	plastid	10.62	23.84
CDY29805	Canola	cytosol	23.01	22.41
CDY25400	Canola	cytosol, plastid	23.01	22.41
CDX82257	Canola	cytosol	22.42	21.84
CDX80771	Canola	cytosol, plastid	25.66	21.53
CDY11199	Canola	plastid	25.66	21.48
CDY36050	Canola	cytosol, plastid	21.83	21.26
CDY23168	Canola	plastid	23.6	21.0
CDX95305	Canola	plastid	23.6	21.0
CDX68026	Canola	plastid	23.3	19.9
CDX79251	Canola	plastid	23.3	19.85
CDY31292	Canola	cytosol	19.47	18.86
CDY14527	Canola	plastid	23.01	18.7
CDY08834	Canola	plastid	23.01	18.66
CDY00231	Canola	cytosol	24.48	17.4
CDX86953	Canola	cytosol	24.48	17.4
CDY55175	Canola	cytosol	23.89	17.31
CDY14050	Canola	cytosol	23.89	17.31
CDY05832	Canola	cytosol	25.37	17.2
CDX71683	Canola	cytosol	25.37	17.2
CDX70028	Canola	cytosol	20.06	17.13
CDY33993	Canola	plastid	17.99	17.09
CDX98981	Canola	endoplasmic reticulum, golgi	18.29	14.55
CDY39471	Canola	cytosol	16.22	13.72

Protein Annotations

Gene3D:1.50.40.10	MapMan:24.2.13	GO:A0A078J0V2	UniProt:A0A078J0V2	EnsemblPlants:CDY56673	ProteinID:CDY56673
ProteinID:CDY56673.1	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00019903001	InterPro:IPR018108	InterPro:IPR023395	InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier
InterPro:Mt_carrier_dom_sf	PFAM:PF00153	PRINTS:PR00926	PFscan:PS50920	PANTHER:PTHR24089	PANTHER:PTHR24089:SF646
SUPFAM:SSF103506	UniParc:UPI0004EECA85	:	:	:	:

Description

BnaCnng30910DBnaCnng30910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J0V2]

Coordinates

chrLK033510:-:15678..18513

Molecular Weight (calculated)

37626.5 Da

IEP (calculated)

9.729

GRAVY (calculated)

-0.037

Length

339 amino acids

Sequence
(BLAST)

001: MSHNMTAVDD DPGQIKRALI DASAGAISGA VSRTVTSPLD VIKIRFQVQL EPTTSWSVVR GNLSGASKYT GMFQATKDIF REEGFRGFWR GNVPALLMVM
101: PYTSIQFTVL HKLKSFASGS TKTEDHIHLS PYLSFISGAL AGCSATLGSY PFDLLRTILA SQGEPKVYPT MRSAFVDIIK SRGVRGLYNG LTPTLVEIVP
201: YAGLQFGTYD MFKRWMMDWN RYMLSSKDQI NVDTNLSSFQ LFVCGLGAGT SAKVVCHPLD VVKKRFQIEG LQRHPRYGAR LEQRVYRNML DGLKQILMSE
301: GWHGLYKGIV PSTVKAAPAG AVTFVAYEFT SDWLESVSW

Best Arabidopsis Sequence Match ( AT5G48970.1 )
(BLAST)

001: MIPTTATVDD EPGQIKRALI DASAGAISGG VSRSVTSPLD VIKIRFQVQL EPTTSWGLVR GNLSGASKYT GMVQATKDIF REEGFRGFWR GNVPALLMVM
101: PYTSIQFTVL HKLKSFASGS TKTEDHIHLS PYLSFVSGAL AGCAATLGSY PFDLLRTILA SQGEPKVYPT MRSAFVDIIQ SRGIRGLYNG LTPTLVEIVP
201: YAGLQFGTYD MFKRWMMDWN RYKLSSKIPI NVDTNLSSFQ LFICGLGAGT SAKLVCHPLD VVKKRFQIEG LQRHPRYGAR VERRAYRNML DGLRQIMISE
301: GWHGLYKGIV PSTVKAAPAG AVTFVAYEFT SDWLESISW

Arabidopsis Description

Mitochondrial thiamine diphosphate carrier 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FI73]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.