Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytoskeleton, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- cytoskeleton 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G454400.1 | Wheat | cytoskeleton, cytosol, plastid | 99.4 | 99.4 |
| Os01t0934200-01 | Rice | cytosol | 90.48 | 90.48 |
| KXG34072 | Sorghum | cytosol | 89.88 | 88.05 |
| HORVU3Hr1G098170.1 | Barley | mitochondrion | 98.51 | 87.11 |
| TraesCS3B01G493000.1 | Wheat | cytosol | 99.7 | 82.72 |
| Zm00001d042213_P004 | Maize | cytosol, plastid | 86.9 | 75.65 |
| VIT_05s0020g01380.t01 | Wine grape | cytosol | 73.51 | 74.85 |
| KRH37122 | Soybean | cytosol | 72.32 | 74.09 |
| KRH12112 | Soybean | cytosol | 72.02 | 73.78 |
| Solyc12g099630.1.1 | Tomato | cytosol | 51.49 | 73.62 |
| Solyc01g067070.2.1 | Tomato | cytosol | 72.32 | 73.41 |
| GSMUA_Achr8P22520_001 | Banana | cytosol | 72.32 | 73.41 |
| KRH50868 | Soybean | cytosol | 72.32 | 73.41 |
| Zm00001d011918_P002 | Maize | cytosol | 87.2 | 73.25 |
| KRH02242 | Soybean | cytosol | 71.13 | 73.09 |
| AT5G48970.1 | Thale cress | cytosol | 70.24 | 69.62 |
| CDY19928 | Canola | cytosol | 69.35 | 69.55 |
| Bra036153.1-P | Field mustard | cytosol | 69.05 | 69.25 |
| CDX86261 | Canola | cytosol | 69.35 | 69.14 |
| CDX85385 | Canola | cytosol | 69.35 | 69.14 |
| CDY56673 | Canola | cytosol | 69.35 | 68.73 |
| PGSC0003DMT400087691 | Potato | mitochondrion | 33.63 | 67.66 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, nucleus | 30.65 | 67.32 |
| AT3G21390.2 | Thale cress | cytosol | 66.67 | 62.75 |
| Bra037443.1-P | Field mustard | cytosol, mitochondrion, plastid | 50.0 | 54.72 |
| TraesCS1D01G434000.1 | Wheat | cytosol | 30.65 | 29.1 |
| TraesCS6D01G176300.3 | Wheat | cytosol | 26.49 | 26.57 |
| TraesCS7D01G056700.1 | Wheat | cytosol | 27.08 | 26.53 |
| TraesCS4D01G211700.2 | Wheat | cytosol | 26.79 | 26.24 |
| TraesCS3D01G058400.1 | Wheat | cytosol, mitochondrion, peroxisome | 24.4 | 24.92 |
| TraesCS5D01G306500.1 | Wheat | plastid | 22.32 | 24.92 |
| TraesCS3D01G251700.1 | Wheat | cytosol, mitochondrion, plastid | 24.7 | 24.63 |
| TraesCS3D01G209300.1 | Wheat | plastid | 24.4 | 24.19 |
| TraesCS1D01G116900.1 | Wheat | cytosol | 28.87 | 23.37 |
| TraesCS7D01G483000.1 | Wheat | cytosol | 28.27 | 22.46 |
| TraesCS7D01G250600.1 | Wheat | cytosol | 23.81 | 21.98 |
| TraesCS3D01G186300.1 | Wheat | mitochondrion | 25.0 | 21.43 |
| TraesCS5D01G282200.1 | Wheat | cytosol | 24.11 | 21.15 |
| TraesCS6D01G168200.1 | Wheat | golgi | 26.79 | 20.98 |
| TraesCS4D01G304600.1 | Wheat | peroxisome | 22.62 | 18.1 |
| TraesCS7D01G372900.1 | Wheat | cytosol, plastid | 26.49 | 17.15 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G446800.1 | EnsemblPlantsGene:TraesCS3D01G446800 | Gene3D:1.50.40.10 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0055085 |
| InterPro:IPR018108 | InterPro:IPR023395 | InterPro:Mit_carrier | InterPro:Mitochondrial_sb/sol_carrier | InterPro:Mt_carrier_dom_sf | PANTHER:PTHR24089 |
| PANTHER:PTHR24089:SF646 | PFAM:PF00153 | PFscan:PS50920 | PRINTS:PR00926 | SUPFAM:SSF103506 | MapMan:24.2.13 |
Description
No Description!
Coordinates
chr3D:+:555476941..555483791
Molecular Weight (calculated)
36682.1 Da
IEP (calculated)
9.658
GRAVY (calculated)
-0.044
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAGAGAAEE PSQTRRALVD TAAGAISGGI SRTVTSPLDV IKIRFQVQLE PTAKWGVLRR DVYGPSKYTG LMQATKDILR EEGLPGFWRG NVPALFMYMP
101: YTAIQFTVLH KLKTFASGSS RTEDHLHLSP YLSYVSGAIA GSAATVGSYP FDLLRTILAS QGEPKVYPNM RSALVDIVQT RGVRGLYAGL TPTLVEIIPY
201: AGLQFGSYDT FKRSMMSWNR YRYGIEEDDS ASSFQLFLCG FAAGTFSKAA CHPLDVVKKR FQIEGLKRHP RYGARIESST YKGMYHALTE IVVKEGFGGL
301: YKGLFPSVVK SAPAGAVTFV AYEYISDWIG AKAGVE
101: YTAIQFTVLH KLKTFASGSS RTEDHLHLSP YLSYVSGAIA GSAATVGSYP FDLLRTILAS QGEPKVYPNM RSALVDIVQT RGVRGLYAGL TPTLVEIIPY
201: AGLQFGSYDT FKRSMMSWNR YRYGIEEDDS ASSFQLFLCG FAAGTFSKAA CHPLDVVKKR FQIEGLKRHP RYGARIESST YKGMYHALTE IVVKEGFGGL
301: YKGLFPSVVK SAPAGAVTFV AYEYISDWIG AKAGVE
001: MIPTTATVDD EPGQIKRALI DASAGAISGG VSRSVTSPLD VIKIRFQVQL EPTTSWGLVR GNLSGASKYT GMVQATKDIF REEGFRGFWR GNVPALLMVM
101: PYTSIQFTVL HKLKSFASGS TKTEDHIHLS PYLSFVSGAL AGCAATLGSY PFDLLRTILA SQGEPKVYPT MRSAFVDIIQ SRGIRGLYNG LTPTLVEIVP
201: YAGLQFGTYD MFKRWMMDWN RYKLSSKIPI NVDTNLSSFQ LFICGLGAGT SAKLVCHPLD VVKKRFQIEG LQRHPRYGAR VERRAYRNML DGLRQIMISE
301: GWHGLYKGIV PSTVKAAPAG AVTFVAYEFT SDWLESISW
101: PYTSIQFTVL HKLKSFASGS TKTEDHIHLS PYLSFVSGAL AGCAATLGSY PFDLLRTILA SQGEPKVYPT MRSAFVDIIQ SRGIRGLYNG LTPTLVEIVP
201: YAGLQFGTYD MFKRWMMDWN RYKLSSKIPI NVDTNLSSFQ LFICGLGAGT SAKLVCHPLD VVKKRFQIEG LQRHPRYGAR VERRAYRNML DGLRQIMISE
301: GWHGLYKGIV PSTVKAAPAG AVTFVAYEFT SDWLESISW
Arabidopsis Description
Mitochondrial thiamine diphosphate carrier 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FI73]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.