CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02242	Soybean	cytosol	95.47	96.64
KRH37122	Soybean	cytosol	87.31	88.11
KRH12112	Soybean	cytosol	86.71	87.5
VIT_05s0020g01380.t01	Wine grape	cytosol	81.57	81.82
Solyc01g067070.2.1	Tomato	cytosol	80.06	80.06
Solyc12g099630.1.1	Tomato	cytosol	54.98	77.45
CDX86261	Canola	cytosol	78.55	77.15
CDY19928	Canola	cytosol	77.95	77.01
CDX85385	Canola	cytosol	78.25	76.85
Bra036153.1-P	Field mustard	cytosol	77.64	76.72
AT5G48970.1	Thale cress	cytosol	78.55	76.7
CDY56673	Canola	cytosol	77.34	75.52
PGSC0003DMT400087691	Potato	mitochondrion	38.07	75.45
Os01t0934200-01	Rice	cytosol	75.83	74.7
KXG34072	Sorghum	cytosol	76.44	73.76
TraesCS3A01G454400.1	Wheat	cytoskeleton, cytosol, plastid	73.41	72.32
TraesCS3D01G446800.1	Wheat	cytoskeleton, cytosol, plastid	73.41	72.32
AT3G21390.2	Thale cress	cytosol	74.92	69.47
GSMUA_Achr10P...	Banana	mitochondrion	26.89	66.42
Zm00001d042213_P004	Maize	cytosol, plastid	77.34	66.32
HORVU3Hr1G098170.1	Barley	mitochondrion	73.11	63.68
Bra037443.1-P	Field mustard	cytosol, mitochondrion, plastid	57.4	61.89
Zm00001d011918_P002	Maize	cytosol	74.62	61.75
TraesCS3B01G493000.1	Wheat	cytosol	73.72	60.25
KRH15889	Soybean	endoplasmic reticulum	22.66	31.38
KRH27854	Soybean	cytosol	30.21	30.3
KRH77631	Soybean	cytosol	29.91	30.0
KRH68888	Soybean	cytosol	30.51	29.28
KRG97138	Soybean	cytosol	30.21	28.99
KRH47947	Soybean	mitochondrion	30.21	28.17
KRH06509	Soybean	cytosol	30.21	28.17
KRH65929	Soybean	cytosol, mitochondrion, peroxisome	28.1	27.93
KRH49045	Soybean	cytosol	26.59	27.24
KRH75891	Soybean	cytosol, peroxisome	15.71	26.94
KRH49196	Soybean	endoplasmic reticulum	21.45	25.82
KRH73096	Soybean	cytosol	25.38	25.69
KRH15037	Soybean	cytosol	25.08	25.46
KRH00061	Soybean	cytosol	25.38	25.3
KRH52207	Soybean	cytosol	25.08	24.56
KRH61524	Soybean	cytosol	25.08	24.48
KRH03708	Soybean	cytosol, mitochondrion, nucleus, plastid	29.0	23.47
KRH49367	Soybean	plastid	26.89	23.3
KRH65751	Soybean	plastid	25.98	22.4
KRH46981	Soybean	plastid	25.38	22.05
KRH44680	Soybean	extracellular	24.77	21.69
KRH05133	Soybean	mitochondrion	27.19	21.53
KRH52458	Soybean	extracellular	25.08	21.23
KRH61786	Soybean	cytosol, nucleus, plastid	24.77	20.97
KRH00225	Soybean	cytosol, endoplasmic reticulum, peroxisome	19.64	20.5
KRH63894	Soybean	cytosol	27.49	19.44
KRH54061	Soybean	cytosol	27.79	19.33
KRG94737	Soybean	cytosol	27.79	19.29
KRH06795	Soybean	cytosol	27.49	19.24
KRH53070	Soybean	cytosol, peroxisome, plasma membrane	24.17	19.23
KRH62352	Soybean	cytosol, peroxisome, plastid	23.87	18.99
KRH43178	Soybean	plastid	23.57	18.8
KRH70079	Soybean	cytosol	26.28	18.01
KRH41046	Soybean	cytosol	26.28	17.68
KRH59718	Soybean	cytosol	26.28	17.4

Protein Annotations

Gene3D:1.50.40.10	EntrezGene:100784986	MapMan:24.2.13	EMBL:ACUP02004716	EnsemblPlantsGene:GLYMA_07G248700	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006810	GO:GO:0006839	GO:GO:0008150	GO:GO:0015234	GO:GO:0016020	GO:GO:0016021
GO:GO:0030974	GO:GO:0031305	GO:GO:0055085	GO:GO:0071934	UniProt:I1KN06	InterPro:IPR018108
InterPro:IPR023395	EnsemblPlants:KRH50868	ProteinID:KRH50868	ProteinID:KRH50868.1	InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier
InterPro:Mt_carrier_dom_sf	PFAM:PF00153	PRINTS:PR00926	PFscan:PS50920	PANTHER:PTHR24089	PANTHER:PTHR24089:SF628
SUPFAM:SSF103506	UniParc:UPI0002338C28	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:42692662..42696028

Molecular Weight (calculated)

36493.2 Da

IEP (calculated)

9.606

GRAVY (calculated)

-0.013

Length

331 amino acids

Sequence
(BLAST)

001: MEEPSKLKRA MIDSLAGAIS GGISRTVTSP LDVIKIRFQV QLEPTSSWAL LRKDLASATA AASKYTGMLQ ATKDILREEG VQGFWRGNVP ALLMVMPYTA
101: IQFTVLHKLK TFASGSSKTE NHINLSPYLS YISGALAGCA ATVGSYPFDL LRTILASQGE PKVYPNMRSA FMDIVHTRGF QGLYSGLSPT LVEIIPYAGL
201: QFGTYDTFKR WGMAWNHRYS NTAAEDNLSS FQLFLCGLAA GTCAKLVCHP LDVVKKRFQI EGLQRHPRYG ARVEHRAYRN MLDAMQRILQ LEGWAGLYKG
301: IIPSTVKAAP AGAVTFVAYE LTSDWLESTF N

Best Arabidopsis Sequence Match ( AT5G48970.1 )
(BLAST)

001: MIPTTATVDD EPGQIKRALI DASAGAISGG VSRSVTSPLD VIKIRFQVQL EPTTSWGLVR GNLSGASKYT GMVQATKDIF REEGFRGFWR GNVPALLMVM
101: PYTSIQFTVL HKLKSFASGS TKTEDHIHLS PYLSFVSGAL AGCAATLGSY PFDLLRTILA SQGEPKVYPT MRSAFVDIIQ SRGIRGLYNG LTPTLVEIVP
201: YAGLQFGTYD MFKRWMMDWN RYKLSSKIPI NVDTNLSSFQ LFICGLGAGT SAKLVCHPLD VVKKRFQIEG LQRHPRYGAR VERRAYRNML DGLRQIMISE
301: GWHGLYKGIV PSTVKAAPAG AVTFVAYEFT SDWLESISW

Arabidopsis Description

Mitochondrial thiamine diphosphate carrier 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FI73]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.