Factsheet for VIT_04s0008g01060.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021172	Potato	plastid	76.74	78.57
Solyc08g062860.2.1	Tomato	cytosol	77.33	77.55
KRH52207	Soybean	cytosol	73.26	74.56
KRH61524	Soybean	cytosol	72.97	74.04
CDX84024	Canola	cytosol	70.64	73.86
CDX96850	Canola	cytosol	70.93	73.72
Bra016697.1-P	Field mustard	cytosol	70.35	73.11
GSMUA_Achr8P26260_001	Banana	cytosol, peroxisome, plastid	71.8	73.08
AT1G14560.1	Thale cress	cytosol	70.06	72.81
CDY45268	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	69.19	72.78
Bra026206.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	68.6	72.17
Os01t0571000-02	Rice	cytosol, peroxisome, plastid	70.64	71.47
HORVU3Hr1G049720.4	Barley	cytosol, peroxisome, plastid	69.77	70.8
TraesCS3D01G209300.1	Wheat	plastid	69.48	70.5
EES00940	Sorghum	plastid	69.48	70.29
TraesCS3A01G206300.1	Wheat	plastid	68.9	69.91
Zm00001d011226_P002	Maize	plastid	68.6	69.41
TraesCS3B01G238400.1	Wheat	cytosol, plastid, vacuole	47.67	69.2
Zm00001d011697_P001	Maize	peroxisome	65.41	67.77
Os01t0708900-01	Rice	cytosol, extracellular, peroxisome	66.28	67.66
TraesCS3A01G251300.1	Wheat	cytosol, mitochondrion, plastid	65.41	66.77
TraesCS3D01G251700.1	Wheat	cytosol, mitochondrion, plastid	65.41	66.77
TraesCS3B01G280800.1	Wheat	cytosol, mitochondrion, plastid	65.41	66.77
EES01355	Sorghum	extracellular	64.53	66.07
CDY67915	Canola	cytosol	45.06	61.51
VIT_11s0016g02470.t01	Wine grape	cytosol	58.14	58.65
HORVU3Hr1G066850.4	Barley	mitochondrion	57.27	57.1
VIT_02s0025g01180.t01	Wine grape	cytosol	36.92	35.88
VIT_15s0046g01290.t01	Wine grape	cytosol	35.17	34.18
VIT_08s0007g01280.t01	Wine grape	cytosol	28.78	29.46
VIT_10s0042g01030.t01	Wine grape	cytosol	10.17	28.46
VIT_05s0020g01380.t01	Wine grape	cytosol	26.74	27.88
VIT_13s0019g02440.t01	Wine grape	cytosol	28.49	27.15
VIT_08s0007g02230.t01	Wine grape	cytosol, mitochondrion, plastid	29.36	26.51
VIT_04s0008g05240.t01	Wine grape	cytosol	30.52	26.45
VIT_11s0016g05110.t01	Wine grape	cytosol	28.78	24.75
VIT_09s0054g00790.t01	Wine grape	cytosol	23.84	23.03
VIT_00s0665g00020.t01	Wine grape	plastid	27.33	22.76
VIT_14s0068g00890.t01	Wine grape	cytosol	30.23	21.27
VIT_18s0001g05620.t01	Wine grape	cytosol	26.45	20.54
VIT_17s0000g00030.t01	Wine grape	plastid	28.78	18.07

Protein Annotations

Gene3D:1.50.40.10	EntrezGene:100256030	wikigene:100256030	MapMan:24.2.13	EMBL:AM474585	ProteinID:CAN83681
ProteinID:CAN83681.1	ProteinID:CBI20644	ProteinID:CBI20644.3	UniProt:D7STP5	EMBL:FN595231	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005743	GO:GO:0006810	GO:GO:0006839	GO:GO:0008150	GO:GO:0015217	GO:GO:0015228
GO:GO:0015866	GO:GO:0016020	GO:GO:0016021	GO:GO:0035349	GO:GO:0055085	GO:GO:0080121
GO:GO:0080122	InterPro:IPR018108	InterPro:IPR023395	EntrezGene:LOC100256030	wikigene:LOC100256030	InterPro:Mit_carrier
InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf	PFAM:PF00153	PRINTS:PR00926	PFscan:PS50920	PANTHER:PTHR24089
PANTHER:PTHR24089:SF617	SUPFAM:SSF103506	UniParc:UPI00015C8962	ArrayExpress:VIT_04s0008g01060	EnsemblPlantsGene:VIT_04s0008g01060	EnsemblPlants:VIT_04s0008g01060.t01
unigene:Vvi.12676	RefSeq:XP_002278410	RefSeq:XP_002278410.1	RefSeq:XP_002278430	RefSeq:XP_002278430.1	SEG:seg

Description

No Description!

Coordinates

chr4:+:896730..900864

Molecular Weight (calculated)

37584.8 Da

IEP (calculated)

10.188

GRAVY (calculated)

0.011

Length

344 amino acids

Sequence
(BLAST)

001: MGSSQGSTLS TNVAGFVDGS TARTEVSYID TMPVYVKELI AGGAAGAFAK TAVAPLERTK ILLQTRTEGF HSLGVYQSLK KILKHEGVLG FYKGNGASVL
101: RIVPYAALHF MTYEQYRSWI LNNCPALGTG PVVDLLAGSV AGGTAVLCTY PLDLARTKLA YQVVDLRGSF RSDMRSLQAQ PAYNGIKDVF KSVYKEGGVR
201: ALYRGVGPTL IGILPYAGLK FYIYEKLKRH VPEEHQKSIA MRLSCGALAG LLGQTFTYPL DVVRRQMQVE NLQPSIQGNA RYRNTLEGLA TITRNQGWRQ
301: LFAGLSINYI KIVPSVAIGF TAYDMIKSWL RVPPRQKAQS ISAA

Best Arabidopsis Sequence Match ( AT1G14560.1 )
(BLAST)

001: MGSSQGSTLS ADVMSLVDTL PVLAKTLIAG GAAGAIAKTA VAPLERIKIL LQTRTNDFKT LGVSQSLKKV LQFDGPLGFY KGNGASVIRI IPYAALHYMT
101: YEVYRDWILE KNLPLGSGPI VDLVAGSAAG GTAVLCTYPL DLARTKLAYQ VSDTRQSLRG GANGFYRQPT YSGIKEVLAM AYKEGGPRGL YRGIGPTLIG
201: ILPYAGLKFY IYEELKRHVP EEHQNSVRMH LPCGALAGLF GQTITYPLDV VRRQMQVENL QPMTSEGNNK RYKNTFDGLN TIVRTQGWKQ LFAGLSINYI
301: KIVPSVAIGF TVYESMKSWM RIPPRERSKP A

Arabidopsis Description

COAC1Mitochondrial carrier protein CoAc1 [Source:UniProtKB/Swiss-Prot;Acc:F4HW79]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.