Factsheet for VIT_04s0008g05240.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15889	Soybean	endoplasmic reticulum	50.63	84.1
Solyc08g061090.2.1	Tomato	plastid	77.58	77.39
PGSC0003DMT400053564	Potato	cytosol, nucleus, plastid	77.58	77.39
TraesCS7A01G495700.1	Wheat	cytosol, plastid	39.29	73.93
KRH52458	Soybean	extracellular	71.79	72.89
KRH61786	Soybean	cytosol, nucleus, plastid	71.28	72.38
CDX68843	Canola	cytosol	23.68	71.76
CDX68841	Canola	cytosol	67.51	71.09
CDX75241	Canola	cytoskeleton, cytosol, nucleus	67.76	70.42
Bra011344.1-P	Field mustard	cytosol	67.51	70.16
VIT_11s0016g05110.t01	Wine grape	cytosol	70.53	70.0
AT4G32400.1	Thale cress	cytosol	68.51	69.39
KRH05133	Soybean	mitochondrion	73.05	69.38
Bra007793.1-P	Field mustard	cytosol	68.77	68.59
CDY11524	Canola	cytosol	68.77	68.59
CDX76755	Canola	cytosol	68.26	68.26
GSMUA_Achr7P10070_001	Banana	cytosol	66.0	67.88
GSMUA_Achr6P05150_001	Banana	cytosol, plastid, vacuole	68.26	67.41
GSMUA_Achr7P10000_001	Banana	mitochondrion	39.29	66.95
Zm00001d009799_P001	Maize	plastid	64.74	63.3
Zm00001d037640_P001	Maize	plastid	63.73	62.32
EER90006	Sorghum	plastid	65.49	61.76
Os05t0171300-01	Rice	mitochondrion, plastid	64.48	61.69
EES17800	Sorghum	cytosol	64.74	61.34
Os06t0602700-01	Rice	plastid	65.24	61.23
Zm00001d046400_P002	Maize	mitochondrion	64.74	61.19
TraesCS1A01G115500.1	Wheat	golgi	63.22	60.77
TraesCS1D01G116900.1	Wheat	cytosol	63.48	60.72
TraesCS7D01G483000.1	Wheat	cytosol	64.48	60.52
TraesCS1B01G135400.1	Wheat	cytosol	62.72	60.44
TraesCS7B01G401600.1	Wheat	cytosol	64.48	60.38
HORVU1Hr1G025480.1	Barley	nucleus, peroxisome, vacuole	62.72	60.29
HORVU7Hr1G111040.2	Barley	cytosol	63.98	60.19
Os02t0202400-01	Rice	plastid	56.93	53.18
TraesCS6B01G210000.1	Wheat	plastid	57.43	53.15
GSMUA_Achr10P...	Banana	endoplasmic reticulum	59.19	52.57
TraesCS6D01G168200.1	Wheat	golgi	56.68	52.45
TraesCS6A01G175100.1	Wheat	plastid	57.18	52.42
Zm00001d015746_P001	Maize	plastid	55.67	50.57
EES04720	Sorghum	plastid	55.16	50.34
VIT_09s0054g00790.t01	Wine grape	cytosol	32.75	36.52
VIT_10s0042g01030.t01	Wine grape	cytosol	9.57	30.89
VIT_04s0008g01060.t01	Wine grape	cytosol	26.45	30.52
VIT_11s0016g02470.t01	Wine grape	cytosol	25.69	29.91
VIT_15s0046g01290.t01	Wine grape	cytosol	26.45	29.66
VIT_02s0025g01180.t01	Wine grape	cytosol	25.44	28.53
VIT_08s0007g01280.t01	Wine grape	cytosol	23.17	27.38
VIT_08s0007g02230.t01	Wine grape	cytosol, mitochondrion, plastid	25.94	27.03
VIT_05s0020g01380.t01	Wine grape	cytosol	22.42	26.97
VIT_13s0019g02440.t01	Wine grape	cytosol	23.93	26.32
VIT_18s0001g05620.t01	Wine grape	cytosol	28.21	25.28
VIT_00s0665g00020.t01	Wine grape	plastid	26.2	25.18
VIT_14s0068g00890.t01	Wine grape	cytosol	27.2	22.09
VIT_17s0000g00030.t01	Wine grape	plastid	28.21	20.44

Protein Annotations

Gene3D:1.50.40.10	EntrezGene:100261079	wikigene:100261079	MapMan:24.2.13	EMBL:AM436851	ProteinID:CAN73822
ProteinID:CAN73822.1	ProteinID:CCB46790	ProteinID:CCB46790.1	UniProt:F6H312	EMBL:FN595231	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005743	GO:GO:0006810	GO:GO:0006839	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0022857	GO:GO:0055085	InterPro:IPR018108	InterPro:IPR023395	EntrezGene:LOC100261079	wikigene:LOC100261079
InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf	PFAM:PF00153	PRINTS:PR00926	PFscan:PS50920
PANTHER:PTHR24089	PANTHER:PTHR24089:SF182	SUPFAM:SSF103506	TIGR:TC65587	UniParc:UPI00015C835E	ArrayExpress:VIT_04s0008g05240
EnsemblPlantsGene:VIT_04s0008g05240	EnsemblPlants:VIT_04s0008g05240.t01	unigene:Vvi.11722	RefSeq:XP_002285050	RefSeq:XP_002285050.1	SEG:seg

Description

No Description!

Coordinates

chr4:-:4744491..4749616

Molecular Weight (calculated)

42393.6 Da

IEP (calculated)

9.482

GRAVY (calculated)

0.036

Length

397 amino acids

Sequence
(BLAST)

001: MGRRGLQVFD DNRKGVFPNC DLGLQWGLQE GAFHPGGLFA SVGQVGMGFG ISPNSPNSRD NNNAGLKLPC MDLYVKYVSS PDGFKILGIP EAAEEGSSNK
101: GKVGLKLKVK VANPSLRRLI SGAIAGAVSR TAVAPLETIR THLMVGSSGH STTEVFNNIM KTDGWKGLFR GNLVNVIRVA PSKAIELFAY DTVNKNLSPI
201: PGEQPKIPIP ASLVAGACAG VSSTLVTYPL ELLKTRLTIQ GDVYNGLLDA FVKILQEGGP AELYRGLTPS LIGVVPYAAT NYFAYDTLRK TYRKILKQEK
301: IGNIETLLIG SLAGAISSSA TFPLEVARKH MQVGALSGRQ VYKNVLHALS SILEQEGIPG LYKGLGPSCL KLVPAAGISF MCYEACKRIL VENEEDA

Best Arabidopsis Sequence Match ( AT4G32400.1 )
(BLAST)

001: MGKTGIQLFD DSRNGFFSVS DLGFDSSLNS SNYHPIGGLF ASVNQTNPFA SLSSSDLSNR GNNSFSTQLN DLYTKYMPGK EEEEEVVNGE KRKRKKKGGL
101: TLKIKIANPS LRRLLSGAVA GAVSRTVVAP LETIRTHLMV GSGGNSSTEV FSDIMKHEGW TGLFRGNLVN VIRVAPARAV ELFVFETVNK KLSPPHGQES
201: KIPIPASLLA GACAGVSQTL LTYPLELVKT RLTIQRGVYK GIFDAFLKII REEGPTELYR GLAPSLIGVV PYAATNYFAY DSLRKAYRSF SKQEKIGNIE
301: TLLIGSLAGA LSSTATFPLE VARKHMQVGA VSGRVVYKNM LHALVTILEH EGILGWYKGL GPSCLKLVPA AGISFMCYEA CKKILIENNQ EA

Arabidopsis Description

BT1SHS1 [Source:UniProtKB/TrEMBL;Acc:A0A178UW29]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.