Factsheet for TraesCS1A01G115500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

mitochondrion 2
peroxisome 1
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, peroxisome, plastid
iPSORT:	mitochondrion
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G116900.1	Wheat	cytosol	97.34	96.87
TraesCS1B01G135400.1	Wheat	cytosol	95.88	96.12
HORVU1Hr1G025480.1	Barley	nucleus, peroxisome, vacuole	95.16	95.16
Zm00001d009799_P001	Maize	plastid	84.02	85.47
Zm00001d037640_P001	Maize	plastid	83.54	84.98
EES17800	Sorghum	cytosol	84.5	83.29
Os05t0171300-01	Rice	mitochondrion, plastid	82.57	82.17
TraesCS7A01G495700.1	Wheat	cytosol, plastid	41.16	80.57
KRH15889	Soybean	endoplasmic reticulum	43.1	74.48
GSMUA_Achr7P10070_001	Banana	cytosol	66.34	70.98
GSMUA_Achr7P10000_001	Banana	mitochondrion	39.95	70.82
CDX68843	Canola	cytosol	21.55	67.94
GSMUA_Achr6P05150_001	Banana	cytosol, plastid, vacuole	64.65	66.42
PGSC0003DMT400053564	Potato	cytosol, nucleus, plastid	62.47	64.82
Solyc08g061090.2.1	Tomato	plastid	61.74	64.07
VIT_11s0016g05110.t01	Wine grape	cytosol	61.26	63.25
VIT_04s0008g05240.t01	Wine grape	cytosol	60.77	63.22
CDX68841	Canola	cytosol	57.63	63.13
AT4G32400.1	Thale cress	cytosol	58.6	61.73
KRH03708	Soybean	cytosol, mitochondrion, nucleus, plastid	61.02	61.61
CDX75241	Canola	cytoskeleton, cytosol, nucleus	56.9	61.52
Bra011344.1-P	Field mustard	cytosol	56.66	61.26
Bra007793.1-P	Field mustard	cytosol	58.6	60.8
CDY11524	Canola	cytosol	58.6	60.8
CDX76755	Canola	cytosol	58.35	60.71
KRH52458	Soybean	extracellular	55.93	59.08
KRH61786	Soybean	cytosol, nucleus, plastid	55.45	58.57
GSMUA_Achr10P...	Banana	endoplasmic reticulum	62.95	58.17
KRH05133	Soybean	mitochondrion	57.63	56.94
TraesCS6A01G175100.1	Wheat	plastid	57.63	54.97
TraesCS5A01G274600.1	Wheat	cytosol, plastid	32.69	35.25
TraesCS7A01G252500.1	Wheat	cytosol	30.75	34.51
TraesCS5A01G277400.1	Wheat	mitochondrion	21.07	32.95
TraesCS1A01G425000.1	Wheat	cytosol	26.15	30.51
TraesCS3A01G454400.1	Wheat	cytoskeleton, cytosol, plastid	23.24	28.57
TraesCS3A01G058200.1	Wheat	cytosol, mitochondrion, peroxisome	22.52	28.27
TraesCS5A01G301600.1	Wheat	plastid	22.28	28.05
TraesCS6A01G187900.2	Wheat	cytosol	22.52	27.76
TraesCS4A01G407200.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	28.09	27.42
TraesCS4A01G093400.1	Wheat	cytosol	22.52	27.19
TraesCS7A01G061900.2	Wheat	cytosol	22.03	27.16
TraesCS3A01G251300.1	Wheat	cytosol, mitochondrion, plastid	21.79	26.71
TraesCS3A01G206300.1	Wheat	plastid	21.55	26.25
TraesCS4A01G428000.1	Wheat	mitochondrion	22.03	23.64
TraesCS3A01G181500.1	Wheat	golgi	22.03	23.21
TraesCS4A01G427000.1	Wheat	mitochondrion	20.1	22.19
TraesCS7A01G376600.1	Wheat	cytosol, plastid	27.84	22.12

Protein Annotations

EnsemblPlants:TraesCS1A01G115500.1	EnsemblPlantsGene:TraesCS1A01G115500	Gene3D:1.50.40.10	GO:GO:0006810	GO:GO:0008150	GO:GO:0055085
InterPro:IPR018108	InterPro:IPR023395	InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf	PANTHER:PTHR24089
PANTHER:PTHR24089:SF358	PFAM:PF00153	PFscan:PS50920	PRINTS:PR00926	SEG:seg	SUPFAM:SSF103506
MapMan:24.2.13	:	:	:	:	:

Description

No Description!

Coordinates

chr1A:+:120002880..120010756

Molecular Weight (calculated)

43888.4 Da

IEP (calculated)

9.637

GRAVY (calculated)

0.042

Length

413 amino acids

Sequence
(BLAST)

001: MSNKSGGVRL QCAEATAADW GCCFLSLSVP PPPPAAPCDA DSNGGFNLAW TLHQSFHPPA GLFASVGHKV GVCFPASSSG AASSGNPRDP LRKYVSPEAV
101: ETSLPVPGDG VGLRGKGKKK AVRIKIKVGN SHLKRLISGG IAGAVSRTVV APLETIRTHL MVGSNGNSST EVFDSIMKNE GWTGLFRGNF VNVIRVAPSK
201: AIELFAFDTA KKFLTPKSGE EQKIPIPPSL VAGAFAGVSS TLCTYPLELI KTRLTIQRGV YDNFLHAFVK IVREEGPAEL YRGLTPSLIG VVPYAATNYF
301: AYDTLKKVYK KMFKTNEIGN VPTLLIGSAA GAISSTATFP LEVARKHMQV GAVGGRKVYK NMLHALLTIL EDEGVGGLYR GLGPSCMKLV PAAGISFMCY
401: EACKKILIEE ENE

Best Arabidopsis Sequence Match ( AT4G32400.1 )
(BLAST)

001: MGKTGIQLFD DSRNGFFSVS DLGFDSSLNS SNYHPIGGLF ASVNQTNPFA SLSSSDLSNR GNNSFSTQLN DLYTKYMPGK EEEEEVVNGE KRKRKKKGGL
101: TLKIKIANPS LRRLLSGAVA GAVSRTVVAP LETIRTHLMV GSGGNSSTEV FSDIMKHEGW TGLFRGNLVN VIRVAPARAV ELFVFETVNK KLSPPHGQES
201: KIPIPASLLA GACAGVSQTL LTYPLELVKT RLTIQRGVYK GIFDAFLKII REEGPTELYR GLAPSLIGVV PYAATNYFAY DSLRKAYRSF SKQEKIGNIE
301: TLLIGSLAGA LSSTATFPLE VARKHMQVGA VSGRVVYKNM LHALVTILEH EGILGWYKGL GPSCLKLVPA AGISFMCYEA CKKILIENNQ EA

Arabidopsis Description

BT1SHS1 [Source:UniProtKB/TrEMBL;Acc:A0A178UW29]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.