Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13155 | Canola | cytosol | 80.55 | 84.0 |
| CDX76183 | Canola | cytosol | 80.0 | 83.43 |
| Bra014855.1-P | Field mustard | cytosol | 81.64 | 83.24 |
| VIT_08s0007g01280.t01 | Wine grape | cytosol | 68.77 | 74.7 |
| AT2G37890.1 | Thale cress | cytosol | 68.77 | 74.48 |
| KRH65929 | Soybean | cytosol, mitochondrion, peroxisome | 65.75 | 72.07 |
| PGSC0003DMT400062351 | Potato | cytosol | 66.3 | 68.75 |
| Solyc09g011360.2.1 | Tomato | cytosol, peroxisome, plastid | 66.58 | 68.45 |
| GSMUA_Achr10P... | Banana | cytosol | 60.27 | 65.28 |
| Os01t0143100-01 | Rice | mitochondrion | 56.44 | 63.98 |
| AT3G55640.4 | Thale cress | plastid | 58.08 | 63.86 |
| Zm00001d047838_P001 | Maize | cytosol | 59.18 | 62.97 |
| OQU92863 | Sorghum | cytosol | 59.45 | 62.72 |
| Zm00001d039884_P002 | Maize | cytosol | 55.89 | 62.2 |
| Os03t0267700-01 | Rice | cytosol | 58.9 | 62.14 |
| EES00336 | Sorghum | cytosol | 56.16 | 62.12 |
| GSMUA_Achr8P02430_001 | Banana | cytosol | 59.73 | 62.11 |
| TraesCS4B01G211000.1 | Wheat | plastid | 56.71 | 61.79 |
| TraesCS4D01G211700.2 | Wheat | cytosol | 57.26 | 60.93 |
| TraesCS4A01G093400.1 | Wheat | cytosol | 56.99 | 60.82 |
| HORVU4Hr1G060540.1 | Barley | cytosol | 56.99 | 60.82 |
| TraesCS3D01G058400.1 | Wheat | cytosol, mitochondrion, peroxisome | 54.52 | 60.49 |
| TraesCS3A01G058200.1 | Wheat | cytosol, mitochondrion, peroxisome | 54.52 | 60.49 |
| TraesCS3B01G070700.1 | Wheat | cytosol, mitochondrion, peroxisome | 54.25 | 60.18 |
| OQU92679 | Sorghum | cytosol | 19.45 | 57.26 |
| GSMUA_Achr6P33950_001 | Banana | plastid | 59.73 | 54.5 |
| HORVU3Hr1G011350.16 | Barley | mitochondrion, plastid | 54.79 | 53.76 |
| AT4G26180.1 | Thale cress | cytosol | 28.77 | 31.72 |
| AT1G14560.1 | Thale cress | cytosol | 26.85 | 29.61 |
| AT4G01100.2 | Thale cress | cytosol | 29.04 | 28.96 |
| AT3G21390.2 | Thale cress | cytosol | 25.75 | 26.33 |
| AT4G32400.1 | Thale cress | cytosol | 27.95 | 26.02 |
| AT3G51870.1 | Thale cress | plastid | 27.12 | 25.98 |
| AT5G48970.1 | Thale cress | cytosol | 24.11 | 25.96 |
| AT5G51050.1 | Thale cress | cytosol | 31.78 | 23.29 |
| AT5G01500.1 | Thale cress | cytosol | 26.3 | 23.13 |
| AT3G20240.1 | Thale cress | cytosol | 21.92 | 22.99 |
| AT1G78180.1 | Thale cress | plastid | 25.75 | 22.49 |
| AT5G61810.1 | Thale cress | cytosol | 28.77 | 21.97 |
| AT5G07320.1 | Thale cress | cytosol | 28.49 | 21.71 |
| AT5G64970.1 | Thale cress | cytosol, mitochondrion, plastid | 25.21 | 21.5 |
Protein Annotations
| Gene3D:1.50.40.10 | MapMan:24.2.13 | EntrezGene:824561 | ProteinID:AEE79162.1 | ArrayExpress:AT3G53940 | EnsemblPlantsGene:AT3G53940 |
| RefSeq:AT3G53940 | TAIR:AT3G53940 | RefSeq:AT3G53940-TAIR-G | EnsemblPlants:AT3G53940.1 | TAIR:AT3G53940.1 | EMBL:AY062478 |
| EMBL:AY093262 | Unigene:At.27329 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005743 | GO:GO:0006810 | GO:GO:0006839 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0022857 | GO:GO:0055085 | InterPro:IPR018108 |
| InterPro:IPR023395 | InterPro:Mit_carrier | InterPro:Mitochondrial_sb/sol_carrier | InterPro:Mt_carrier_dom_sf | RefSeq:NP_190962.2 | PFAM:PF00153 |
| PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007057 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009031 |
| PO:PO:0009046 | PO:PO:0009052 | PO:PO:0025022 | PRINTS:PR00926 | PFscan:PS50920 | PANTHER:PTHR24089 |
| PANTHER:PTHR24089:SF403 | UniProt:Q8W4M2 | SUPFAM:SSF103506 | UniParc:UPI00000A1C92 | SEG:seg | : |
Description
Mitochondrial substrate carrier family protein [Source:UniProtKB/TrEMBL;Acc:Q8W4M2]
Coordinates
chr3:-:19970929..19973769
Molecular Weight (calculated)
39763.8 Da
IEP (calculated)
9.999
GRAVY (calculated)
-0.073
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MEARVGVVVE GGQRALNTAT TTAVHNTVVD AGNRKLLQQQ PQTQQTQSCH QHHQSNKQSL NQQQGHFGTV ERLLAGGIAG AFSKTCTAPL ARLTILFQIQ
101: GMQSEAAILS SPNIWHEASR IVKEEGFRAF WKGNLVTVAH RLPYGAVNFY AYEEYKTFLH SNPVLQSYKG NAGVDISVHF VSGGLAGLTA ASATYPLDLV
201: RTRLSAQRNS IYYQGVGHAF RTICREEGIL GLYKGLGATL LGVGPSLAIS FAAYETFKTF WLSHRPNDSN AVVSLGCGSL SGIVSSTATF PLDLVRRRMQ
301: LEGAGGRARV YTTGLFGTFK HIFKTEGMRG LYRGIIPEYY KVVPGVGIAF MTFEELKKLL STVPN
101: GMQSEAAILS SPNIWHEASR IVKEEGFRAF WKGNLVTVAH RLPYGAVNFY AYEEYKTFLH SNPVLQSYKG NAGVDISVHF VSGGLAGLTA ASATYPLDLV
201: RTRLSAQRNS IYYQGVGHAF RTICREEGIL GLYKGLGATL LGVGPSLAIS FAAYETFKTF WLSHRPNDSN AVVSLGCGSL SGIVSSTATF PLDLVRRRMQ
301: LEGAGGRARV YTTGLFGTFK HIFKTEGMRG LYRGIIPEYY KVVPGVGIAF MTFEELKKLL STVPN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.