Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 4
- golgi 3
- plastid 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400007510 | Potato | extracellular | 94.65 | 91.24 |
| Solyc07g042390.1.1 | Tomato | nucleus | 57.75 | 57.75 |
| VIT_11s0016g00590.t01 | Wine grape | extracellular | 51.87 | 51.6 |
| Bra006573.1-P | Field mustard | cytosol | 25.67 | 48.98 |
| CDY16561 | Canola | extracellular | 43.85 | 41.84 |
| KRH12602 | Soybean | extracellular | 48.13 | 41.67 |
| KRH37544 | Soybean | endoplasmic reticulum, extracellular | 47.06 | 41.12 |
| CDY72130 | Canola | extracellular | 44.38 | 40.89 |
| Bra002328.1-P | Field mustard | extracellular | 43.85 | 40.39 |
| CDX70942 | Canola | extracellular | 43.85 | 40.2 |
| CDX92436 | Canola | extracellular | 43.32 | 39.9 |
| KRH02570 | Soybean | extracellular | 42.25 | 38.54 |
| Solyc03g083770.1.1 | Tomato | nucleus | 38.5 | 36.0 |
| AT5G20740.2 | Thale cress | endoplasmic reticulum, extracellular, plastid | 43.85 | 34.31 |
| Solyc03g083730.1.1 | Tomato | nucleus | 36.36 | 33.83 |
| Solyc03g083720.1.1 | Tomato | endoplasmic reticulum, plastid | 35.83 | 32.06 |
| Solyc06g034370.1.1 | Tomato | extracellular | 32.09 | 31.25 |
| Solyc03g083660.1.1 | Tomato | endoplasmic reticulum, extracellular | 31.02 | 29.9 |
| Solyc03g083710.1.1 | Tomato | nucleus | 30.48 | 29.23 |
| Solyc08g007450.1.1 | Tomato | extracellular | 31.55 | 29.21 |
| Solyc11g019910.1.1 | Tomato | extracellular | 30.48 | 29.08 |
| Solyc10g076730.1.1 | Tomato | extracellular | 32.62 | 29.05 |
| Solyc08g006690.1.1 | Tomato | nucleus | 29.41 | 28.35 |
| Solyc03g083700.1.1 | Tomato | endoplasmic reticulum, extracellular | 27.27 | 26.84 |
| Solyc10g018320.1.1 | Tomato | extracellular | 29.41 | 26.7 |
| Solyc01g091100.2.1 | Tomato | extracellular | 27.81 | 25.24 |
| Solyc01g091110.2.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 27.81 | 24.3 |
| Solyc10g018330.1.1 | Tomato | endoplasmic reticulum, extracellular | 28.34 | 23.77 |
Protein Annotations
| EnsemblPlants:Solyc12g009270.1.1 | EnsemblPlantsGene:Solyc12g009270.1 | Gene3D:1.20.140.40 | GO:GO:0003674 | GO:GO:0004857 | GO:GO:0008150 |
| GO:GO:0030234 | GO:GO:0043086 | InterPro:IPR035513 | InterPro:Invertase/methylesterase_inhib | InterPro:Pectinesterase_inhib_dom | PANTHER:PTHR31080 |
| PANTHER:PTHR31080:SF26 | PFAM:PF04043 | SEG:seg | SignalP:SignalP-noTM | SMART:SM00856 | SUPFAM:SSF101148 |
| TIGRFAMs:TIGR01614 | UniParc:UPI000276983B | UniProt:K4DC15 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr12:-:2546424..2546987
Molecular Weight (calculated)
21167.8 Da
IEP (calculated)
10.447
GRAVY (calculated)
-0.150
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MFRFLPLLLL ILHFSHFTSG KNTITSYSTN HLVYTSCTKA SYPKICIRTL SSYSTIKTPK DLAKASLNVS ISRSNKASKF LKNLKVNSKR EKGALVDCIE
101: QIGDSIHELR KSLFELKHLH KGIGFRFQMS NLETWISASL TNDDTCLDGF KEIDGKVRYD VKRRISNVAK VTSNALYLIN LLGGFRI
101: QIGDSIHELR KSLFELKHLH KGIGFRFQMS NLETWISASL TNDDTCLDGF KEIDGKVRYD VKRRISNVAK VTSNALYLIN LLGGFRI
001: MAPTQNLFLV AIAFAVIFTA STVHGRHNGA EDIVHSSCEH ASYPSLCVRT LSSYSGPTIT NRRDLAQAAI KISLSHAQSA AKKLAVVRDS VGKKKQEKAA
101: LVDCVEMIGD SVDELSRTLG VLKHLRVSGG SAKEFRWQMS NAQTWASAAL TDDDTCLDGF QGMDDGEIKT EVKQWMTKVA RVTSNALYMV NQLDETRGKP
201: HDVHL
101: LVDCVEMIGD SVDELSRTLG VLKHLRVSGG SAKEFRWQMS NAQTWASAAL TDDDTCLDGF QGMDDGEIKT EVKQWMTKVA RVTSNALYMV NQLDETRGKP
201: HDVHL
Arabidopsis Description
Plant invertase/pectin methylesterase inhibitor superfamily protein [Source:TAIR;Acc:AT5G20740]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.