Factsheet for Solyc03g083730.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
extracellular 4
endoplasmic reticulum 3
vacuole 4
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	vacuole

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031363	Potato	plastid	91.54	91.54
PGSC0003DMT400031362	Potato	extracellular	84.08	83.25
Solyc03g083770.1.1	Tomato	nucleus	78.61	79.0
VIT_16s0022g00870.t01	Wine grape	endoplasmic reticulum, extracellular	56.72	57.0
VIT_16s0022g00860.t01	Wine grape	extracellular	54.73	54.73
VIT_16s0022g00830.t01	Wine grape	endoplasmic reticulum, extracellular	54.73	54.46
VIT_16s0022g00840.t01	Wine grape	endoplasmic reticulum, extracellular	54.73	54.46
CDX87244	Canola	plastid	53.23	53.77
Bra035897.1-P	Field mustard	plastid	52.74	53.27
CDY16779	Canola	plastid	52.74	53.27
CDX86901	Canola	endoplasmic reticulum, extracellular, plastid	52.74	53.0
Bra010076.1-P	Field mustard	endoplasmic reticulum, extracellular	51.74	52.53
CDY00279	Canola	endoplasmic reticulum, extracellular	51.74	52.53
AT5G62360.1	Thale cress	endoplasmic reticulum, extracellular, plastid	52.24	51.72
KRH39988	Soybean	endoplasmic reticulum, extracellular	49.25	47.83
KRH23798	Soybean	plastid	46.77	46.53
Solyc06g034370.1.1	Tomato	extracellular	41.29	43.23
GSMUA_Achr5P19900_001	Banana	endoplasmic reticulum, vacuole	44.28	42.58
Solyc03g083720.1.1	Tomato	endoplasmic reticulum, plastid	44.28	42.58
GSMUA_Achr4P24680_001	Banana	endoplasmic reticulum, mitochondrion, plastid, vacuole	45.27	41.94
GSMUA_Achr1P04190_001	Banana	extracellular	41.79	41.18
Solyc07g042390.1.1	Tomato	nucleus	34.33	36.9
Solyc12g009270.1.1	Tomato	nucleus	33.83	36.36
Solyc08g007450.1.1	Tomato	extracellular	33.83	33.66
Solyc10g076730.1.1	Tomato	extracellular	34.83	33.33
Solyc08g006690.1.1	Tomato	nucleus	30.85	31.96
Solyc03g083710.1.1	Tomato	nucleus	30.85	31.79
Solyc03g083660.1.1	Tomato	endoplasmic reticulum, extracellular	30.35	31.44
Solyc01g091100.2.1	Tomato	extracellular	31.84	31.07
Solyc11g019910.1.1	Tomato	extracellular	29.85	30.61
Zm00001d032495_P001	Maize	extracellular	32.34	29.68
Solyc10g018320.1.1	Tomato	extracellular	30.35	29.61
Solyc10g018330.1.1	Tomato	endoplasmic reticulum, extracellular	32.84	29.6
TraesCS1B01G200600.1	Wheat	extracellular	31.34	29.58
TraesCS1D01G178200.1	Wheat	extracellular	31.34	29.3
Os10t0508700-01	Rice	extracellular	30.85	28.97
TraesCS1A01G180000.1	Wheat	extracellular	30.35	28.5
Solyc01g091110.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	30.35	28.5
Solyc03g083700.1.1	Tomato	endoplasmic reticulum, extracellular	26.37	27.89
EER91394	Sorghum	extracellular, plasma membrane	30.85	27.8
HORVU1Hr1G047710.1	Barley	extracellular, mitochondrion, plasma membrane	31.34	27.63
EER91393	Sorghum	extracellular	30.85	25.94

Protein Annotations

EnsemblPlants:Solyc03g083730.1.1	EnsemblPlantsGene:Solyc03g083730.1	Gene3D:1.20.140.40	GO:GO:0003674	GO:GO:0004857	GO:GO:0008150
GO:GO:0030234	GO:GO:0043086	InterPro:IPR035513	InterPro:Invertase/methylesterase_inhib	InterPro:Pectinesterase_inhib_dom	PANTHER:PTHR31080
PANTHER:PTHR31080:SF19	PFAM:PF04043	SEG:seg	SignalP:SignalP-noTM	SMART:SM00856	SUPFAM:SSF101148
TIGRFAMs:TIGR01614	UniParc:UPI0002768CEE	UniProt:K4BIE9	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr3:+:53670191..53670796

Molecular Weight (calculated)

21445.7 Da

IEP (calculated)

7.386

GRAVY (calculated)

0.010

Length

201 amino acids

Sequence
(BLAST)

001: MTGGYFFTYF LISIALIISS NNSNSVSAAR PASGETNTDF IRTSCKSTTY PTLCFSSLSS RSSAIGVSPQ LLAHESLSVS LETAQSTSAM MLKLSHSQGM
101: TPREVGAMRD CVEELSDAVS GIKKSLGEMK ELKGKDFDLK MNDIQTWVSA ALTDEDTCTE GFAGKVMNGK VKTVVRGKIL EVAQLTSNAL ALINRLAAIH
201: G

Best Arabidopsis Sequence Match ( AT5G62360.1 )
(BLAST)

001: MGESFRLFNH HHFLTTFLII IAMLKLVHTT TTTTTTTTTN TEFVKSSCTF TTYPRLCFSS LSTHASLIQT SPKLMAHAAL NITLASAKVT SAMMVRLSNS
101: RLKPKEVSAM RDCVEELGDT LEELRKSIGE MCQLSGSNYE VYISDIQTWV SAALTDVNTC TDGFEGEDMD GKVKVLVRGR ILVIAHLTSN ALALINHFAS
201: IHG

Arabidopsis Description

Plant invertase/pectin methylesterase inhibitor superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LVA3]
SUBAcon: [endoplasmic reticulum,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.