Factsheet for Solyc03g083770.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
endoplasmic reticulum 3
plasma membrane 3
extracellular 3
vacuole 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	extracellular

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072092	Potato	endoplasmic reticulum, extracellular, vacuole	92.0	92.93
PGSC0003DMT400031359	Potato	endoplasmic reticulum, extracellular	84.0	87.05
Solyc03g083730.1.1	Tomato	nucleus	79.0	78.61
VIT_16s0022g00870.t01	Wine grape	endoplasmic reticulum, extracellular	58.5	58.5
VIT_16s0022g00860.t01	Wine grape	extracellular	57.5	57.21
VIT_16s0022g00830.t01	Wine grape	endoplasmic reticulum, extracellular	57.0	56.44
VIT_16s0022g00840.t01	Wine grape	endoplasmic reticulum, extracellular	57.0	56.44
CDX86901	Canola	endoplasmic reticulum, extracellular, plastid	55.5	55.5
CDX87244	Canola	plastid	54.5	54.77
Bra035897.1-P	Field mustard	plastid	54.0	54.27
CDY16779	Canola	plastid	54.0	54.27
AT5G62360.1	Thale cress	endoplasmic reticulum, extracellular, plastid	54.0	53.2
Bra010076.1-P	Field mustard	endoplasmic reticulum, extracellular	52.5	53.03
CDY00279	Canola	endoplasmic reticulum, extracellular	52.5	53.03
KRH39988	Soybean	endoplasmic reticulum, extracellular	50.5	48.79
KRH23798	Soybean	plastid	48.0	47.52
Solyc06g034370.1.1	Tomato	extracellular	44.0	45.83
GSMUA_Achr5P19900_001	Banana	endoplasmic reticulum, vacuole	46.0	44.02
Solyc03g083720.1.1	Tomato	endoplasmic reticulum, plastid	45.0	43.06
GSMUA_Achr4P24680_001	Banana	endoplasmic reticulum, mitochondrion, plastid, vacuole	45.0	41.47
GSMUA_Achr1P04190_001	Banana	extracellular	42.0	41.18
Solyc12g009270.1.1	Tomato	nucleus	36.0	38.5
Solyc07g042390.1.1	Tomato	nucleus	35.5	37.97
Solyc08g007450.1.1	Tomato	extracellular	34.5	34.16
Solyc08g006690.1.1	Tomato	nucleus	31.0	31.96
Solyc10g076730.1.1	Tomato	extracellular	33.0	31.43
Solyc11g019910.1.1	Tomato	extracellular	30.5	31.12
Solyc03g083660.1.1	Tomato	endoplasmic reticulum, extracellular	30.0	30.93
Solyc01g091100.2.1	Tomato	extracellular	31.5	30.58
Solyc10g018330.1.1	Tomato	endoplasmic reticulum, extracellular	34.0	30.49
TraesCS1B01G200600.1	Wheat	extracellular	32.0	30.05
TraesCS1D01G178200.1	Wheat	extracellular	32.0	29.77
Zm00001d032495_P001	Maize	extracellular	32.0	29.22
TraesCS1A01G180000.1	Wheat	extracellular	31.0	28.97
Solyc03g083710.1.1	Tomato	nucleus	28.0	28.72
Solyc10g018320.1.1	Tomato	extracellular	29.5	28.64
Solyc01g091110.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	30.5	28.5
Os10t0508700-01	Rice	extracellular	30.5	28.5
EER91394	Sorghum	extracellular, plasma membrane	31.5	28.25
Solyc03g083700.1.1	Tomato	endoplasmic reticulum, extracellular	26.5	27.89
HORVU1Hr1G047710.1	Barley	extracellular, mitochondrion, plasma membrane	31.5	27.63
EER91393	Sorghum	extracellular	32.0	26.78

Protein Annotations

Gene3D:1.20.140.40	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0004857	GO:GO:0008150
GO:GO:0030234	GO:GO:0043086	InterPro:IPR035513	InterPro:Invertase/methylesterase_inhib	UniProt:K4BIF2	PFAM:PF04043
PANTHER:PTHR31080	PANTHER:PTHR31080:SF19	InterPro:Pectinesterase_inhib_dom	SMART:SM00856	SUPFAM:SSF101148	SignalP:SignalP-noTM
EnsemblPlantsGene:Solyc03g083770.1	EnsemblPlants:Solyc03g083770.1.1	TIGRFAMs:TIGR01614	TMHMM:TMhelix	UniParc:UPI0002768CF1	SEG:seg

Description

No Description!

Coordinates

chr3:+:53705243..53705845

Molecular Weight (calculated)

21654.9 Da

IEP (calculated)

6.772

GRAVY (calculated)

-0.117

Length

200 amino acids

Sequence
(BLAST)

001: MEGCCNNHYN FLTIFLILLA FTTSTSSTRP ATGHTNTEFI RTSCKSTTYP NLCFSSLSSR SSAIGVSPQL LAHESLSVSL ETAQSTSAMM LKLSHSQGMT
101: PREVGAMQDC VEELSDTVSE LRKSLGEMKQ LRGRDFDMKM SDIQTWVSAA LTNEDTCTEG FAGKAMNGKV KTAIRGKIVE VAHMTSNALA LINTLDALHG

Best Arabidopsis Sequence Match ( AT5G62360.1 )
(BLAST)

001: MGESFRLFNH HHFLTTFLII IAMLKLVHTT TTTTTTTTTN TEFVKSSCTF TTYPRLCFSS LSTHASLIQT SPKLMAHAAL NITLASAKVT SAMMVRLSNS
101: RLKPKEVSAM RDCVEELGDT LEELRKSIGE MCQLSGSNYE VYISDIQTWV SAALTDVNTC TDGFEGEDMD GKVKVLVRGR ILVIAHLTSN ALALINHFAS
201: IHG

Arabidopsis Description

Plant invertase/pectin methylesterase inhibitor superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LVA3]
SUBAcon: [endoplasmic reticulum,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.