Factsheet for Solyc03g083710.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g083660.1.1	Tomato	endoplasmic reticulum, extracellular	64.62	64.95
Solyc03g083700.1.1	Tomato	endoplasmic reticulum, extracellular	50.26	51.58
Solyc11g019910.1.1	Tomato	extracellular	49.74	49.49
PGSC0003DMT400028039	Potato	extracellular	84.1	48.52
Bra019180.1-P	Field mustard	extracellular	34.87	34.17
CDY11065	Canola	extracellular	34.87	34.17
VIT_16s0022g00940.t01	Wine grape	plastid	36.92	34.12
Bra013878.1-P	Field mustard	plastid	26.15	34.0
CDX92686	Canola	cytosol, nucleus, plastid	14.87	33.33
Bra013879.1-P	Field mustard	plastid	25.13	32.67
Bra028261.1-P	Field mustard	cytosol, plastid	28.21	32.54
Solyc06g034370.1.1	Tomato	extracellular	31.79	32.29
AT5G51520.1	Thale cress	extracellular	32.82	31.37
KRH39989	Soybean	mitochondrion	33.33	30.95
Solyc03g083730.1.1	Tomato	nucleus	31.79	30.85
AT4G25250.1	Thale cress	extracellular	31.28	30.65
Solyc12g009270.1.1	Tomato	nucleus	29.23	30.48
CDY70934	Canola	extracellular	31.79	30.39
CDX89431	Canola	extracellular	30.77	30.15
CDX91588	Canola	extracellular	32.31	30.14
GSMUA_Achr1P04190_001	Banana	extracellular	31.28	29.9
GSMUA_Achr5P19900_001	Banana	endoplasmic reticulum, vacuole	31.79	29.67
CDX94465	Canola	extracellular	30.26	29.65
CDX89432	Canola	extracellular	30.26	29.65
KRH23797	Soybean	plastid	31.28	28.5
Solyc03g083720.1.1	Tomato	endoplasmic reticulum, plastid	30.26	28.23
TraesCS1A01G180000.1	Wheat	extracellular	30.77	28.04
Solyc03g083770.1.1	Tomato	nucleus	28.72	28.0
CDY68609	Canola	extracellular	29.23	27.94
CDY00484	Canola	extracellular	29.23	27.94
CDY11064	Canola	extracellular	34.36	27.69
KRH62604	Soybean	endoplasmic reticulum, extracellular	32.31	27.63
TraesCS1D01G178200.1	Wheat	extracellular	30.26	27.44
Zm00001d032495_P001	Maize	extracellular	30.77	27.4
KRH56360	Soybean	extracellular	32.31	27.39
TraesCS1B01G200600.1	Wheat	extracellular	29.23	26.76
HORVU1Hr1G047710.1	Barley	extracellular, mitochondrion, plasma membrane	30.77	26.32
GSMUA_Achr4P24680_001	Banana	endoplasmic reticulum, mitochondrion, plastid, vacuole	29.23	26.27
EER91394	Sorghum	extracellular, plasma membrane	29.74	26.01
Os10t0508700-01	Rice	extracellular	28.21	25.7
Solyc07g042390.1.1	Tomato	nucleus	24.62	25.67
EER91393	Sorghum	extracellular	31.28	25.52
Solyc08g007450.1.1	Tomato	extracellular	26.15	25.25
Solyc10g018320.1.1	Tomato	extracellular	26.67	25.24
CDX94464	Canola	extracellular	25.13	25.13
CDX89430	Canola	extracellular	25.13	25.13
Solyc01g091110.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	26.67	24.3
Solyc08g006690.1.1	Tomato	nucleus	24.1	24.23
Solyc10g076730.1.1	Tomato	extracellular	24.1	22.38
Solyc10g018330.1.1	Tomato	endoplasmic reticulum, extracellular	25.13	21.97
Solyc01g091100.2.1	Tomato	extracellular	22.05	20.87

Protein Annotations

EnsemblPlants:Solyc03g083710.1.1	EnsemblPlantsGene:Solyc03g083710.1	Gene3D:1.20.140.40	GO:GO:0003674	GO:GO:0004857	GO:GO:0008150
GO:GO:0030234	GO:GO:0043086	InterPro:IPR035513	InterPro:Invertase/methylesterase_inhib	InterPro:Pectinesterase_inhib_dom	PANTHER:PTHR31080
PANTHER:PTHR31080:SF15	PFAM:PF04043	SEG:seg	SignalP:SignalP-noTM	SMART:SM00856	SUPFAM:SSF101148
TIGRFAMs:TIGR01614	TMHMM:TMhelix	UniParc:UPI0002768CEC	UniProt:K4BIE7	MapMan:35.1	:

Description

No Description!

Coordinates

chr3:-:53652491..53653078

Molecular Weight (calculated)

20900.4 Da

IEP (calculated)

9.204

GRAVY (calculated)

0.120

Length

195 amino acids

Sequence
(BLAST)

001: MASSCQSLIF LLFSIVLFSS QTHVLVTAAK DSNTNFVKTK CKITTYPSLC VKTLIPYASS VKTNSTKLCK EALNVATKGA RDATAIVLNL KKQKGITRYE
101: AAAIKDCIED VKDAVYELKL AVEAIGHLGD KDKAFQLANA KTYASAAITD ADSCTGGLTD QGKVNPKVMD AISRSMAVVI KLSSNALSLI NHIYE

Best Arabidopsis Sequence Match ( AT4G25250.1 )
(BLAST)

001: MLRFVVLSLT LMVFINSSNF PKTAATPPGT YQNHTTYVKT ACNSTTYPTM CYNCLSSYSS TIKSDPIKLC TTSLNLNVKS AKNATLVVSN LLQKAKAAKS
101: HEVSILKDCV DEMKDTIDEL KQAVAEMKYV RGGGKTTEEH LKNVKTWVSS ALTDEGTCTD GFEEGRVNVE TKKKVKKAIS ELSKTTSNTL ALLTHYLSY

Arabidopsis Description

PMEI4Pectinesterase inhibitor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SB38]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.