Factsheet for TraesCS1D01G238200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5B01G115400.1
TraesCS5D01G122800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65290.1	TraesCS4A01G206200.2	AT1G35670.1	19130088
AT1G65290.1	TraesCS4B01G109800.2	AT1G35670.1	19130088
AT1G65290.1	TraesCS4D01G107200.1	AT1G35670.1	19130088
AT1G65290.1	TraesCS5A01G107900.1	AT1G35670.1	19130088
AT1G65290.1	TraesCS5B01G115400.1	AT1G35670.1	19130088
AT1G65290.1	TraesCS5D01G122800.1	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G249700.1	Wheat	mitochondrion	93.85	95.31
Os05t0377000-01	Rice	mitochondrion	85.38	86.05
Zm00001d038057_P002	Maize	mitochondrion	80.0	81.89
EES19437	Sorghum	mitochondrion	80.0	81.25
GSMUA_Achr1P11200_001	Banana	mitochondrion	66.92	69.6
HORVU1Hr1G057570.4	Barley	mitochondrion, plastid	87.69	66.28
AT1G65290.1	Thale cress	mitochondrion	63.08	65.08
CDY39292	Canola	mitochondrion	58.46	62.81
CDY37654	Canola	mitochondrion	63.08	62.6
CDY65005	Canola	mitochondrion	63.08	62.6
Solyc04g015370.2.1	Tomato	mitochondrion	61.54	62.5
PGSC0003DMT400070136	Potato	mitochondrion	61.54	62.5
PGSC0003DMT400060304	Potato	mitochondrion	62.31	61.83
Bra035355.1-P	Field mustard	mitochondrion	62.31	61.83
Solyc05g056240.2.1	Tomato	mitochondrion	61.54	61.07
PGSC0003DMT400064261	Potato	mitochondrion	60.77	60.31
VIT_04s0023g00840.t01	Wine grape	mitochondrion	58.46	59.84
CDX91509	Canola	mitochondrion	60.0	59.54
Bra022484.1-P	Field mustard	mitochondrion	60.0	59.54
TraesCS4D01G159800.1	Wheat	mitochondrion	60.77	59.4
CDY16401	Canola	mitochondrion	59.23	58.78
KRH37350	Soybean	extracellular, golgi	33.08	55.13
TraesCS7D01G183300.1	Wheat	mitochondrion	50.77	50.0
CDY07443	Canola	mitochondrion	58.46	41.53
Bra004110.1-P	Field mustard	mitochondrion	58.46	41.53

Protein Annotations

Gene3D:1.10.1200.10	MapMan:5.1.5.1	InterPro:ACP-like_sf	InterPro:Acyl_carrier	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR009081	InterPro:IPR036736
HAMAP:MF_01217	PFAM:PD000887	PFAM:PF00550	InterPro:PP-bd_ACP	ScanProsite:PS00012	PFscan:PS50075
PANTHER:PTHR20863	PANTHER:PTHR20863:SF37	InterPro:Ppantetheine_attach_site	SUPFAM:SSF47336	TIGRFAMs:TIGR00517	EnsemblPlantsGene:TraesCS1D01G238200
EnsemblPlants:TraesCS1D01G238200.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:327930695..327933645

Molecular Weight (calculated)

14022.7 Da

IEP (calculated)

5.225

GRAVY (calculated)

-0.035

Length

130 amino acids

Sequence
(BLAST)

001: MAMAAARRAL LNHFRVPVAR PAVAAGAAGS VPVARLLSST SEVEKGSFLD KGEVADRVVS VIKNFQKIEP SKVTPNAHFQ KDLGLDSLDT VEIVMAFEEE
101: FSFEIPDNEA EKIDSIKSAV DFIASHPQAK

Best Arabidopsis Sequence Match ( AT1G65290.1 )
(BLAST)

001: MAARGAMLRY LRVNVNPTIQ NPRECVLPFS ILLRRFSEEV RGSFLDKSEV TDRVLSVVKN FQKVDPSKVT PKANFQNDLG LDSLDSVEVV MALEEEFGFE
101: IPDNEADKIQ SIDLAVDFIA SHPQAK

Arabidopsis Description

MTACP2Acyl carrier protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O80800]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.