Factsheet for TraesCS3A01G222900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus
Any Predictor:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308
nucleus: 28628250

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 28628250 doi

T Bonnot, E Bancel, D Alvarez, M Davanture, J Boudet, M Pailloux, M Zivy, C Ravel, P Martre

LIMOS, CNRS, Université Blaise Pascal, Aubière, 63173, France., UMR GDEC, INRA, Université Clermont Auvergne, 5 chemin de Beaulieu, Clermont-Ferrand, 63039, France., UMR GQE, INRA, Université Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, Gif-sur-Yvette, 91190, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G230600.1	Wheat	cytosol, golgi, unclear	98.53	98.53
TraesCS3B01G252400.1	Wheat	cytosol	97.65	97.65
HORVU3Hr1G054640.2	Barley	cytosol	96.48	96.48
Os01t0618100-01	Rice	plasma membrane	87.1	86.34
TraesCS7A01G184900.1	Wheat	cytosol	85.34	85.59
TraesCS7A01G185000.1	Wheat	cytosol	84.16	82.95
EES03282	Sorghum	cytosol	81.82	79.94
Zm00001d044212_P001	Maize	cytosol, extracellular, mitochondrion	79.18	78.95
KXG33406	Sorghum	mitochondrion	67.74	73.1
KXG32909	Sorghum	plastid	80.06	71.09
VIT_14s0030g01960.t01	Wine grape	cytosol	66.57	66.96
VIT_14s0030g01980.t01	Wine grape	cytosol	66.86	66.67
TraesCS7A01G195600.1	Wheat	cytosol	65.98	65.98
VIT_14s0030g02050.t01	Wine grape	cytosol	65.69	65.31
VIT_14s0030g02020.t01	Wine grape	cytosol	66.28	65.13
Solyc01g097390.2.1	Tomato	plastid	64.81	64.24
VIT_05s0020g04130.t01	Wine grape	cytosol	64.81	64.06
VIT_14s0030g01970.t01	Wine grape	cytosol	63.93	62.82
Solyc01g097380.1.1	Tomato	plastid	61.29	62.76
PGSC0003DMT400016488	Potato	mitochondrion	42.82	60.58
Solyc09g082720.2.1	Tomato	cytosol, plastid	61.29	60.58
PGSC0003DMT400016484	Potato	cytosol	61.58	60.34
VIT_14s0030g01990.t01	Wine grape	cytosol	61.88	60.11
VIT_14s0030g02060.t01	Wine grape	peroxisome	61.58	59.83
Solyc09g082730.2.1	Tomato	cytosol	59.53	58.67
TraesCS4A01G349500.1	Wheat	cytosol	34.31	58.5
VIT_14s0030g02010.t01	Wine grape	extracellular, mitochondrion	18.48	56.76
TraesCS2A01G274700.1	Wheat	cytosol, mitochondrion, peroxisome	56.89	56.07
TraesCS2A01G274800.1	Wheat	cytosol	55.72	54.76
TraesCS2A01G326100.1	Wheat	mitochondrion	52.49	51.59
TraesCS2A01G325800.2	Wheat	cytosol, mitochondrion	51.03	49.01
TraesCS5A01G331200.1	Wheat	cytosol	31.38	46.32
TraesCS2A01G254100.1	Wheat	mitochondrion, plastid	31.67	29.11
TraesCS2A01G254200.1	Wheat	mitochondrion	29.33	26.74
TraesCS3A01G080900.1	Wheat	cytosol	26.98	25.63
TraesCS6A01G392700.1	Wheat	golgi	24.93	22.43
TraesCS4A01G235300.1	Wheat	plastid	26.1	22.25
TraesCS4A01G235500.1	Wheat	plastid	26.39	22.22
TraesCS1A01G180800.1	Wheat	plastid	24.34	22.13

Protein Annotations

EnsemblPlants:TraesCS3A01G222900.1	EnsemblPlantsGene:TraesCS3A01G222900	Gene3D:3.20.20.100	InterPro:IPR036812	InterPro:NADP_OxRdtase_dom	InterPro:NADP_OxRdtase_dom_sf
PANTHER:PTHR43625	PANTHER:PTHR43625:SF2	PFAM:PF00248	SEG:seg	SUPFAM:SSF51430	TIGR:cd06660
MapMan:50.1.1	:	:	:	:	:

Description

No Description!

Coordinates

chr3A:+:416448844..416450897

Molecular Weight (calculated)

37765.0 Da

IEP (calculated)

6.903

GRAVY (calculated)

-0.352

Length

341 amino acids

Sequence
(BLAST)

001: MAQTSPIPRV SLGTQGLEVS KLGFGCMGLT GSYNSPVEDD AGVAVITHAF NRGVTFFDTS DVYGPHANEI LLGKALKQLP REQVQVATKF GIQRDAQGKS
101: TICGRPEYVR ACCEASLHRL GVHHIDLYYQ HRIDTTIPIE DTIGELKKLV EEGKVKYIGL SEASPDTIRR AHAVHPISSV QMEWSLWARD IEPEIVPLCR
201: ELGIGIVPYS PIARGFFGGR GVTQQVSAES SLKGHPRFSA ENLEKNKQLY LKIEELAKKH QCSPAQLALS WVLHQGDDVV PIPGTTKIKN LDSNIDSLKV
301: RLTEDDLKEI SNEIREEDVA GGRQYTSFAK FTWNYADTPK K

Best Arabidopsis Sequence Match ( AT1G60680.1 )
(BLAST)

001: MAEACRVRRM KLGSQGLEVS AQGLGCMALS ARYGAPKPET DAIALLHHAI NSGVTFFDTS DMYGPETNEL LLGKALKDGV KEKVELATKF GFFIVEGEIS
101: EVRGDPEYVR AACEASLKRL DIACIDLYYQ HRIDTRVPIE ITMRELKKLV EEGKIKYIGL SEASASTIRR AHAVHPITAV QIEWSLWSRD AEEDIIPICR
201: ELGIGIVAYS PLGRGFLAAG PKLAENLEND DFRKTLPRFQ QENVDHNKIL FEKVSAMAEK KGCTPAQLAL AWVHHQGDDV CPIPGTTKIE NLNQNIRALS
301: VKLTPEEISE LDSLAKPESV KGERYMASMS TFKNSNTPPL SSWKAT

Arabidopsis Description

AGD2Probable aldo-keto reductase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q84M96]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.