Factsheet for TraesCSU01G045200.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G201500.1
TraesCS5B01G200200.1
TraesCS5D01G207800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61290.1	TraesCS5A01G201500.1	AT2G19560.1	19843313
AT5G61290.1	TraesCS5B01G200200.1	AT2G19560.1	19843313
AT5G61290.1	TraesCS5D01G207800.1	AT2G19560.1	19843313

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G014100.2	Wheat	cytosol	100.0	100.0
TraesCS3A01G010900.1	Wheat	cytosol	89.38	92.23
TraesCS3D01G000800.1	Wheat	cytosol	89.19	89.53
TraesCSU01G030500.1	Wheat	cytosol	52.51	63.85
TraesCSU01G087500.1	Wheat	cytosol	63.9	62.1
TraesCSU01G032200.1	Wheat	peroxisome	53.67	57.92
TraesCSU01G033300.1	Wheat	cytosol	54.05	57.61
TraesCSU01G033200.1	Wheat	cytosol	28.96	56.39
Solyc03g115560.2.1	Tomato	cytosol, peroxisome, plastid	48.46	55.16
PGSC0003DMT400063125	Potato	cytosol, peroxisome, plastid	48.46	55.16
VIT_17s0000g06790.t01	Wine grape	cytosol, peroxisome, plastid	47.3	53.96
Bra012970.1-P	Field mustard	cytosol	45.56	52.8
CDY14028	Canola	cytosol, mitochondrion, peroxisome, plastid	46.33	52.29
Bra012971.1-P	Field mustard	cytosol	46.33	52.17
CDY40773	Canola	mitochondrion	45.95	51.85
Bra028683.1-P	Field mustard	mitochondrion	45.95	51.85
CDX99030	Canola	cytosol, mitochondrion, peroxisome, plastid	45.17	51.66
AT5G07800.1	Thale cress	cytosol	45.75	51.52
CDY02157	Canola	cytosol	45.75	51.3
CDX69991	Canola	cytosol, mitochondrion, peroxisome, plastid	44.79	51.21
CDY02158	Canola	cytosol	39.58	51.12
CDY23071	Canola	cytosol	45.56	51.08
Bra009308.1-P	Field mustard	cytosol, mitochondrion, peroxisome	45.37	50.98
CDY23072	Canola	cytosol	39.38	50.87
AT5G61290.1	Thale cress	cytosol	44.98	50.54
KRH55196	Soybean	cytosol, mitochondrion, peroxisome	10.62	48.25
VIT_17s0000g06780.t01	Wine grape	cytosol, peroxisome, plastid	47.49	23.08

Protein Annotations

Gene3D:3.50.50.60	MapMan:35.1	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:Flavin_mOase	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004499	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0050660	GO:GO:0050661	GO:GO:0055114	InterPro:IPR036188	PFAM:PF07992
PIRSF:PIRSF000332	PRINTS:PR00370	PANTHER:PTHR23023	PANTHER:PTHR23023:SF86	SUPFAM:SSF51905	EnsemblPlantsGene:TraesCSU01G045200
EnsemblPlants:TraesCSU01G045200.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:35559564..35561345

Molecular Weight (calculated)

57573.2 Da

IEP (calculated)

6.740

GRAVY (calculated)

-0.366

Length

518 amino acids

Sequence
(BLAST)

001: MDTACGSKPP QSKKVCIIGA GMAGLAAARE LRREGHDVTV LEQSGDVGGQ WLYDPRTDAD DALGVAAPVK VHSSIYASLR LISPRQTTGF TDFPFCPKSG
101: RDDRRFPGHR EVHLYLKDFC DAFGLMEAVR LNTRVLHAAM TPACKWAVRS MDLGIGECDG ADGKELDAYV DEVFDAVVVA SGHYSQPRLP SIKGKCKATQ
201: APRTKHVPII VYYKEEDVRT GMETWRGRQM HSHSYRVPEP FRGEVVVVVG CGDSGRDIAM EIRGVAEEVY IVAGSMEAVT PGLSKVLAKY STNLHLRLEV
301: ERLCEDGRVA FKDGGGSSSS VAADTVIYCT GYNYSFPFLD TGGAVAVDDN RVGPLFEHVF PPSLAPSLSF VGLLRKVFAP RSFEAQARWV AQVLSGRRKL
401: PTEEEMLRSV EEFYRAREIA GVPSKYTHEI RSLKCSYVDD FGEKYCDFPR QERWQYELLR SSVHDMMDKF ETFRDDYQDS DSIRKAVQEW HLSCLQSSSK
501: AGSEISRAWA KQEPGASK

Best Arabidopsis Sequence Match ( AT1G62620.1 )
(BLAST)

001: MAPALSPTRS HHVAVIGAGP AGLVAARELR REGHSVVVFE KQKQVGGTWI YTDEVESDPL SVDPTRSVVH SSVYRSLRIN GTRECTGYRD FPFVVRSGVS
101: RDPRRFPSHG EVLAYLKDFA KEFGIEEMVR FETEVVKVSP AAEEGIGKWR IESTEKEKKV RRDEIYDAVV VCNGHYVEPR LAQIPGISSW PGKEMHSHNY
201: RIPEPFRDKV VVLIGNSSSA EDISRDIARV AKEVHVACRS NPADTFIKQT GYNNLWTHSM IESVHEDGSV VYQNGKTISV DIIMHCTGYK YHFPFLDTNG
301: IVTVDDNRVG PLYKDVFPPA FAPWLSFIGI PWQVLPFPMF ELQSKWIAGV LSGRIPLPSK EDMMIEIKTF YSTLEVQGIP KRYTHRMGNT QFEYYNWLAS
401: QCGCSETEEW RKEMCLANGV RKEAHPETYR DEWDDHHLVS EAYQDFSLYS

Arabidopsis Description

Flavin-containing monooxygenase FMO GS-OX-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.