Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 7
- plasma membrane 5
- golgi 6
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41464 | Canola | cytosol | 62.63 | 84.35 |
| Bra016363.1-P | Field mustard | cytosol | 62.63 | 84.35 |
| CDY41462 | Canola | cytosol | 61.62 | 83.56 |
| Bra016361.1-P | Field mustard | cytosol | 54.55 | 81.82 |
| CDX91697 | Canola | cytosol | 58.59 | 78.38 |
| VIT_01s0011g05070.t01 | Wine grape | cytosol | 14.65 | 39.19 |
| AT1G70870.1 | Thale cress | cytosol | 26.26 | 37.41 |
| VIT_01s0011g05110.t01 | Wine grape | cytosol | 27.27 | 35.76 |
| VIT_01s0011g05120.t01 | Wine grape | cytosol | 26.77 | 35.1 |
| VIT_01s0011g05130.t01 | Wine grape | cytosol | 24.24 | 31.79 |
| AT1G70890.1 | Thale cress | cytosol | 24.75 | 31.01 |
| KRH32895 | Soybean | cytosol | 23.23 | 30.07 |
| KRH07297 | Soybean | cytosol | 22.73 | 29.8 |
| KRH44774 | Soybean | cytosol | 22.73 | 29.61 |
| KRH44771 | Soybean | cytosol, mitochondrion | 22.73 | 29.61 |
| AT5G28000.1 | Thale cress | cytosol | 24.24 | 29.27 |
| KRH38207 | Soybean | cytosol | 22.22 | 28.76 |
| KRH13141 | Soybean | cytosol | 21.72 | 28.29 |
| AT5G28010.2 | Thale cress | cytosol | 22.73 | 27.11 |
| KRH13115 | Soybean | cytosol | 20.71 | 26.97 |
| KRH72121 | Soybean | cytosol, vacuole | 19.19 | 26.95 |
| AT1G70840.1 | Thale cress | cytosol | 23.23 | 26.9 |
| KRH17964 | Soybean | cytosol | 20.71 | 26.8 |
| KRH44775 | Soybean | cytosol, mitochondrion | 20.71 | 26.8 |
| AT1G35260.1 | Thale cress | cytosol | 18.69 | 24.34 |
| AT1G70880.1 | Thale cress | cytosol | 19.19 | 23.9 |
| AT1G35310.1 | Thale cress | cytosol | 17.17 | 22.52 |
| AT1G23130.1 | Thale cress | cytosol | 18.18 | 22.5 |
| AT1G70860.2 | Thale cress | cytosol | 7.58 | 20.0 |
| AT1G70850.1 | Thale cress | cytosol | 26.26 | 16.46 |
| AT1G70830.1 | Thale cress | cytosol | 22.73 | 13.43 |
Protein Annotations
| Gene3D:3.30.530.20 | MapMan:35.1 | EntrezGene:838920 | UniProt:A0A1P8AW70 | ProteinID:ANM60909.1 | ArrayExpress:AT1G23120 |
| EnsemblPlantsGene:AT1G23120 | RefSeq:AT1G23120 | TAIR:AT1G23120 | RefSeq:AT1G23120-TAIR-G | EnsemblPlants:AT1G23120.2 | InterPro:Bet_v_I/MLP |
| GO:GO:0006950 | GO:GO:0006952 | GO:GO:0008150 | GO:GO:0009607 | InterPro:IPR023393 | RefSeq:NP_001323157.1 |
| PFAM:PF00407 | PANTHER:PTHR31338 | SMART:SM01037 | SUPFAM:SSF55961 | InterPro:START-like_dom_sf | TMHMM:TMhelix |
| UniParc:UPI000848BDC5 | SEG:seg | : | : | : | : |
Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein [Source:TAIR;Acc:AT1G23120]
Coordinates
chr1:+:8198586..8199616
Molecular Weight (calculated)
23338.1 Da
IEP (calculated)
7.430
GRAVY (calculated)
-0.483
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MLIKKLLRIR HLPCLPLFLF SSLGFLLYAF CYGKDKQQKS QRERLDYLRA MAGVQTLELE IQVNMTAERF FKTFKKKEGN FTDKTEAVYV HRDDPTSNSS
101: IQIWNFIVDG KMEQIKEKID VDEENKSVSF LALEGDVLKQ YKSYKITLDV VPKDHKVCIA KWTWEYEKLN DDVPPPTRYT AFVEDYTRDL ETRLLSES
101: IQIWNFIVDG KMEQIKEKID VDEENKSVSF LALEGDVLKQ YKSYKITLDV VPKDHKVCIA KWTWEYEKLN DDVPPPTRYT AFVEDYTRDL ETRLLSES
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.