Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra014370.1-P | |
| Bra030909.1-P | |
| Bra037960.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G00585.1 | Bra014370.1-P | AT1G54060.1 | 21798944 |
| AT4G00585.1 | Bra030909.1-P | AT1G54060.1 | 21798944 |
| AT4G00585.1 | Bra037960.1-P | AT1G54060.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74341 | Canola | cytosol | 95.35 | 97.62 |
| Bra037348.1-P | Field mustard | extracellular, golgi, mitochondrion | 94.19 | 95.29 |
| Bra017857.1-P | Field mustard | cytosol, extracellular, mitochondrion | 90.7 | 89.66 |
| AT4G00585.1 | Thale cress | cytosol | 83.72 | 81.82 |
| GSMUA_Achr8P03520_001 | Banana | mitochondrion | 58.14 | 80.65 |
| Os09t0560300-01 | Rice | cytosol, plasma membrane, plastid | 74.42 | 77.11 |
| Zm00001d006336_P001 | Maize | cytosol | 72.09 | 76.54 |
| VIT_16s0100g01290.t01 | Wine grape | cytosol | 70.93 | 76.25 |
| VIT_15s0046g03680.t01 | Wine grape | cytosol | 73.26 | 75.9 |
| EER99354 | Sorghum | cytosol, mitochondrion, peroxisome | 72.09 | 75.61 |
| KRH00688 | Soybean | cytosol | 76.74 | 75.0 |
| TraesCS5D01G373000.1 | Wheat | cytosol | 72.09 | 74.7 |
| TraesCS5B01G366000.1 | Wheat | cytosol | 72.09 | 74.7 |
| TraesCS5A01G364100.1 | Wheat | cytosol | 72.09 | 74.7 |
| HORVU5Hr1G089380.1 | Barley | cytosol | 72.09 | 74.7 |
| CDX91903 | Canola | cytosol, extracellular, golgi | 84.88 | 73.74 |
| GSMUA_Achr9P25090_001 | Banana | cytosol | 74.42 | 73.56 |
| KRH40506 | Soybean | cytosol | 76.74 | 73.33 |
| Solyc03g025910.2.1 | Tomato | cytosol | 68.6 | 72.84 |
| PGSC0003DMT400037074 | Potato | cytosol | 68.6 | 72.84 |
| Zm00001d021375_P002 | Maize | cytosol, extracellular, golgi | 51.16 | 52.38 |
| HORVU0Hr1G013700.1 | Barley | cytosol, mitochondrion | 50.0 | 32.58 |
Protein Annotations
Description
AT4G00585 (E=2e-038) | unknown protein
Coordinates
chrA03:+:14160332..14161634
Molecular Weight (calculated)
9608.7 Da
IEP (calculated)
9.357
GRAVY (calculated)
-0.469
Length
86 amino acids
Sequence
(BLAST)
(BLAST)
1: MGGGGGGEGV GDFRAKVWSM SGGPYCRPKH WRRNTAFAML GVFLVCIPIA MKSAELEQRP HMPVRPIPSQ IWCKNFGTKD DYEKEH
1: MGGGDHGHGA EGGDFRAKVW SMTGGPNCRP KHWRRNTAIA MFGVFLVCIP IAKLSAKLEQ RPHMPVRPIP SQIWCKNFGT KDDYEKEH
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q8VZT9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.