Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- plastid 1
- extracellular 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr3P05880_001 | |
| GSMUA_Achr8P23650_001 | |
| GSMUA_Achr9P14340_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G00585.1 | GSMUA_Achr3P05880_001 | AT1G54060.1 | 21798944 |
| AT4G00585.1 | GSMUA_Achr8P23650_001 | AT1G54060.1 | 21798944 |
| AT4G00585.1 | GSMUA_Achr9P14340_001 | AT1G54060.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P03520_001 | Banana | mitochondrion | 67.82 | 95.16 |
| VIT_16s0100g01290.t01 | Wine grape | cytosol | 79.31 | 86.25 |
| TraesCS5D01G373000.1 | Wheat | cytosol | 80.46 | 84.34 |
| TraesCS5B01G366000.1 | Wheat | cytosol | 80.46 | 84.34 |
| TraesCS5A01G364100.1 | Wheat | cytosol | 80.46 | 84.34 |
| Os09t0560300-01 | Rice | cytosol, plasma membrane, plastid | 80.46 | 84.34 |
| HORVU5Hr1G089380.1 | Barley | cytosol | 80.46 | 84.34 |
| EER99354 | Sorghum | cytosol, mitochondrion, peroxisome | 79.31 | 84.15 |
| Zm00001d006336_P001 | Maize | cytosol | 78.16 | 83.95 |
| VIT_15s0046g03680.t01 | Wine grape | cytosol | 77.01 | 80.72 |
| KRH00688 | Soybean | cytosol | 79.31 | 78.41 |
| KRH40506 | Soybean | cytosol | 80.46 | 77.78 |
| CDX74341 | Canola | cytosol | 73.56 | 76.19 |
| Bra000966.1-P | Field mustard | cytosol, extracellular, mitochondrion | 73.56 | 74.42 |
| PGSC0003DMT400037074 | Potato | cytosol | 68.97 | 74.07 |
| Solyc03g025910.2.1 | Tomato | cytosol | 68.97 | 74.07 |
| CDY31618 | Canola | cytosol | 73.56 | 73.56 |
| Bra017857.1-P | Field mustard | cytosol, extracellular, mitochondrion | 72.41 | 72.41 |
| CDY51150 | Canola | cytosol | 70.11 | 71.76 |
| Bra037348.1-P | Field mustard | extracellular, golgi, mitochondrion | 70.11 | 71.76 |
| AT4G00585.1 | Thale cress | cytosol | 72.41 | 71.59 |
| CDX91903 | Canola | cytosol, extracellular, golgi | 68.97 | 60.61 |
| Zm00001d021375_P002 | Maize | cytosol, extracellular, golgi | 54.02 | 55.95 |
| CDX72659 | Canola | mitochondrion, nucleus | 72.41 | 43.75 |
| CDY07208 | Canola | extracellular, golgi, plasma membrane | 55.17 | 36.09 |
| HORVU0Hr1G013700.1 | Barley | cytosol, mitochondrion | 51.72 | 34.09 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P25090_001 | EnsemblPlants:GSMUA_Achr9T25090_001 | EnsemblPlantsGene:GSMUA_Achr9G25090_001 | PANTHER:PTHR34286 | PANTHER:PTHR34286:SF3 | SEG:seg |
| UniParc:UPI000295A27F | UniProt:M0U3B6 | MapMan:35.2 | : | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G25090_001]
Coordinates
chr9:+:29688291..29691168
Molecular Weight (calculated)
9725.8 Da
IEP (calculated)
10.196
GRAVY (calculated)
-0.522
Length
87 amino acids
Sequence
(BLAST)
(BLAST)
1: MGGNGGGGHG VHHGGVEDFR NKVWSMTGGP YCRPKHWKRN TAIAMFGAFL VCIPIAMKSA ELEQRPHYPV RPIPSQLWCK NFGKKEY
1: MGGGDHGHGA EGGDFRAKVW SMTGGPNCRP KHWRRNTAIA MFGVFLVCIP IAKLSAKLEQ RPHMPVRPIP SQIWCKNFGT KDDYEKEH
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q8VZT9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.