Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74341 | Canola | cytosol | 55.56 | 95.24 |
| CDY31618 | Canola | cytosol | 56.25 | 93.1 |
| CDY51150 | Canola | cytosol | 54.86 | 92.94 |
| AT4G00585.1 | Thale cress | cytosol | 50.0 | 81.82 |
| GSMUA_Achr8P03520_001 | Banana | mitochondrion | 34.03 | 79.03 |
| Zm00001d006336_P001 | Maize | cytosol | 43.75 | 77.78 |
| VIT_16s0100g01290.t01 | Wine grape | cytosol | 43.06 | 77.5 |
| Os09t0560300-01 | Rice | cytosol, plasma membrane, plastid | 44.44 | 77.11 |
| EER99354 | Sorghum | cytosol, mitochondrion, peroxisome | 43.75 | 76.83 |
| TraesCS5A01G364100.1 | Wheat | cytosol | 43.06 | 74.7 |
| TraesCS5B01G366000.1 | Wheat | cytosol | 43.06 | 74.7 |
| HORVU5Hr1G089380.1 | Barley | cytosol | 43.06 | 74.7 |
| TraesCS5D01G373000.1 | Wheat | cytosol | 43.06 | 74.7 |
| PGSC0003DMT400037074 | Potato | cytosol | 41.67 | 74.07 |
| Solyc03g025910.2.1 | Tomato | cytosol | 41.67 | 74.07 |
| VIT_15s0046g03680.t01 | Wine grape | cytosol | 42.36 | 73.49 |
| KRH00688 | Soybean | cytosol | 44.44 | 72.73 |
| GSMUA_Achr9P25090_001 | Banana | cytosol | 43.75 | 72.41 |
| KRH40506 | Soybean | cytosol | 45.14 | 72.22 |
| CDX91903 | Canola | cytosol, extracellular, golgi | 47.92 | 69.7 |
| Zm00001d021375_P002 | Maize | cytosol, extracellular, golgi | 31.25 | 53.57 |
| CDY07208 | Canola | extracellular, golgi, plasma membrane | 37.5 | 40.6 |
| HORVU0Hr1G013700.1 | Barley | cytosol, mitochondrion | 29.86 | 32.58 |
Protein Annotations
| EnsemblPlants:CDX72659 | EnsemblPlantsGene:GSBRNA2T00100228001 | GO:A0A078C903 | PANTHER:PTHR34286 | PANTHER:PTHR34286:SF3 | ProteinID:CDX72659 |
| ProteinID:CDX72659.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EDED15 | MapMan:35.2 | : |
Description
BnaC07g46810D
Coordinates
chrLK031796:+:2476939..2478069
Molecular Weight (calculated)
16891.6 Da
IEP (calculated)
11.143
GRAVY (calculated)
-0.906
Length
144 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFFNYRRPK YLRRRRTVHE KKHTRKSRFV TSLSIKRRDD PNLLHLPPLD LRKKKGDPMG GGAENGHGGD FRAKVWSMSG GPYCRPKHWR RNTAFAMFGV
101: FLVCIPIAMK SAELEQRPHM PVRPIPSQIW CKNFGTKDDY EKEH
101: FLVCIPIAMK SAELEQRPHM PVRPIPSQIW CKNFGTKDDY EKEH
1: MGGGDHGHGA EGGDFRAKVW SMTGGPNCRP KHWRRNTAIA MFGVFLVCIP IAKLSAKLEQ RPHMPVRPIP SQIWCKNFGT KDDYEKEH
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q8VZT9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.