Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 1
- mitochondrion 1
- cytosol 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51150 | Canola | cytosol | 73.74 | 85.88 |
| CDX74341 | Canola | cytosol | 72.73 | 85.71 |
| Bra000966.1-P | Field mustard | cytosol, extracellular, mitochondrion | 73.74 | 84.88 |
| CDY31618 | Canola | cytosol | 69.7 | 79.31 |
| GSMUA_Achr8P03520_001 | Banana | mitochondrion | 48.48 | 77.42 |
| Zm00001d006336_P001 | Maize | cytosol | 61.62 | 75.31 |
| Os09t0560300-01 | Rice | cytosol, plasma membrane, plastid | 62.63 | 74.7 |
| EER99354 | Sorghum | cytosol, mitochondrion, peroxisome | 61.62 | 74.39 |
| TraesCS5D01G373000.1 | Wheat | cytosol | 61.62 | 73.49 |
| TraesCS5B01G366000.1 | Wheat | cytosol | 61.62 | 73.49 |
| TraesCS5A01G364100.1 | Wheat | cytosol | 61.62 | 73.49 |
| HORVU5Hr1G089380.1 | Barley | cytosol | 61.62 | 73.49 |
| KRH00688 | Soybean | cytosol | 63.64 | 71.59 |
| AT4G00585.1 | Thale cress | cytosol | 63.64 | 71.59 |
| VIT_16s0100g01290.t01 | Wine grape | cytosol | 57.58 | 71.25 |
| KRH40506 | Soybean | cytosol | 63.64 | 70.0 |
| VIT_15s0046g03680.t01 | Wine grape | cytosol | 58.59 | 69.88 |
| PGSC0003DMT400037074 | Potato | cytosol | 56.57 | 69.14 |
| Solyc03g025910.2.1 | Tomato | cytosol | 56.57 | 69.14 |
| GSMUA_Achr9P25090_001 | Banana | cytosol | 60.61 | 68.97 |
| Zm00001d021375_P002 | Maize | cytosol, extracellular, golgi | 44.44 | 52.38 |
| CDX72659 | Canola | mitochondrion, nucleus | 69.7 | 47.92 |
| CDY07208 | Canola | extracellular, golgi, plasma membrane | 57.58 | 42.86 |
| HORVU0Hr1G013700.1 | Barley | cytosol, mitochondrion | 42.42 | 31.82 |
Protein Annotations
| EnsemblPlants:CDX91903 | EnsemblPlantsGene:GSBRNA2T00153530001 | PANTHER:PTHR34286 | PANTHER:PTHR34286:SF3 | ProteinID:CDX91903 | ProteinID:CDX91903.1 |
| UniParc:UPI0004EF1C99 | MapMan:35.2 | : | : | : | : |
Description
BnaC03g32050D
Coordinates
chrLK031870:+:697019..698179
Molecular Weight (calculated)
10888.5 Da
IEP (calculated)
10.486
GRAVY (calculated)
-0.118
Length
99 amino acids
Sequence
(BLAST)
(BLAST)
1: MGGGGGGDFR AKVWSMSGGP YCRPKHWRHN TAFAMLGVFL VCIPIAMKSA ELEQMPHMPV RPIPSQIWCK NFGTKDVASI FNQLNGSRIL PGTKIEKSL
1: MGGGDHGHGA EGGDFRAKVW SMTGGPNCRP KHWRRNTAIA MFGVFLVCIP IAKLSAKLEQ RPHMPVRPIP SQIWCKNFGT KDDYEKEH
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q8VZT9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.