Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000966.1-P | Field mustard | cytosol, extracellular, mitochondrion | 97.62 | 95.35 |
| CDY51150 | Canola | cytosol | 94.05 | 92.94 |
| CDY31618 | Canola | cytosol | 94.05 | 90.8 |
| AT4G00585.1 | Thale cress | cytosol | 85.71 | 81.82 |
| GSMUA_Achr8P03520_001 | Banana | mitochondrion | 59.52 | 80.65 |
| Zm00001d006336_P001 | Maize | cytosol | 73.81 | 76.54 |
| VIT_16s0100g01290.t01 | Wine grape | cytosol | 72.62 | 76.25 |
| Os09t0560300-01 | Rice | cytosol, plasma membrane, plastid | 75.0 | 75.9 |
| EER99354 | Sorghum | cytosol, mitochondrion, peroxisome | 73.81 | 75.61 |
| VIT_15s0046g03680.t01 | Wine grape | cytosol | 73.81 | 74.7 |
| TraesCS5D01G373000.1 | Wheat | cytosol | 73.81 | 74.7 |
| TraesCS5B01G366000.1 | Wheat | cytosol | 73.81 | 74.7 |
| HORVU5Hr1G089380.1 | Barley | cytosol | 73.81 | 74.7 |
| TraesCS5A01G364100.1 | Wheat | cytosol | 73.81 | 74.7 |
| KRH00688 | Soybean | cytosol | 77.38 | 73.86 |
| GSMUA_Achr9P25090_001 | Banana | cytosol | 76.19 | 73.56 |
| PGSC0003DMT400037074 | Potato | cytosol | 70.24 | 72.84 |
| Solyc03g025910.2.1 | Tomato | cytosol | 70.24 | 72.84 |
| CDX91903 | Canola | cytosol, extracellular, golgi | 85.71 | 72.73 |
| KRH40506 | Soybean | cytosol | 77.38 | 72.22 |
| CDX72659 | Canola | mitochondrion, nucleus | 95.24 | 55.56 |
| Zm00001d021375_P002 | Maize | cytosol, extracellular, golgi | 52.38 | 52.38 |
| CDY07208 | Canola | extracellular, golgi, plasma membrane | 65.48 | 41.35 |
| HORVU0Hr1G013700.1 | Barley | cytosol, mitochondrion | 51.19 | 32.58 |
Protein Annotations
| EnsemblPlants:CDX74341 | EnsemblPlantsGene:GSBRNA2T00112144001 | PANTHER:PTHR34286 | PANTHER:PTHR34286:SF3 | ProteinID:CDX74341 | ProteinID:CDX74341.1 |
| UniParc:UPI0004EE7C68 | MapMan:35.2 | : | : | : | : |
Description
BnaA03g27060D
Coordinates
chrLK031800:-:2297077..2299066
Molecular Weight (calculated)
9494.6 Da
IEP (calculated)
9.357
GRAVY (calculated)
-0.470
Length
84 amino acids
Sequence
(BLAST)
(BLAST)
1: MGGGGEGVGD FRAKVWSMSG GPYCRPKHWR RNTAFAMLGV FLVCIPIAMK SAELEQRPHM PVRPIPSQIW CKNFGTKDDY EKEH
1: MGGGDHGHGA EGGDFRAKVW SMTGGPNCRP KHWRRNTAIA MFGVFLVCIP IAKLSAKLEQ RPHMPVRPIP SQIWCKNFGT KDDYEKEH
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q8VZT9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.