Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, peroxisome, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 1
- mitochondrion 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G00585.1 | EES12241 | AT1G54060.1 | 21798944 |
| AT4G00585.1 | KXG30464 | AT1G54060.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d006336_P001 | Maize | cytosol | 98.78 | 100.0 |
| Os09t0560300-01 | Rice | cytosol, plasma membrane, plastid | 96.34 | 95.18 |
| HORVU5Hr1G089380.1 | Barley | cytosol | 93.9 | 92.77 |
| TraesCS5D01G373000.1 | Wheat | cytosol | 93.9 | 92.77 |
| TraesCS5B01G366000.1 | Wheat | cytosol | 93.9 | 92.77 |
| TraesCS5A01G364100.1 | Wheat | cytosol | 93.9 | 92.77 |
| GSMUA_Achr8P03520_001 | Banana | mitochondrion | 65.85 | 87.1 |
| VIT_16s0100g01290.t01 | Wine grape | cytosol | 84.15 | 86.25 |
| VIT_15s0046g03680.t01 | Wine grape | cytosol | 81.71 | 80.72 |
| GSMUA_Achr9P25090_001 | Banana | cytosol | 84.15 | 79.31 |
| KRH00688 | Soybean | cytosol | 82.93 | 77.27 |
| KRH40506 | Soybean | cytosol | 84.15 | 76.67 |
| CDY51150 | Canola | cytosol | 76.83 | 74.12 |
| Bra037348.1-P | Field mustard | extracellular, golgi, mitochondrion | 76.83 | 74.12 |
| PGSC0003DMT400037074 | Potato | cytosol | 73.17 | 74.07 |
| Solyc03g025910.2.1 | Tomato | cytosol | 73.17 | 74.07 |
| CDX74341 | Canola | cytosol | 75.61 | 73.81 |
| AT4G00585.1 | Thale cress | cytosol | 78.05 | 72.73 |
| CDY31618 | Canola | cytosol | 76.83 | 72.41 |
| Bra000966.1-P | Field mustard | cytosol, extracellular, mitochondrion | 75.61 | 72.09 |
| Bra017857.1-P | Field mustard | cytosol, extracellular, mitochondrion | 75.61 | 71.26 |
| CDX91903 | Canola | cytosol, extracellular, golgi | 74.39 | 61.62 |
| CDX72659 | Canola | mitochondrion, nucleus | 76.83 | 43.75 |
| CDY07208 | Canola | extracellular, golgi, plasma membrane | 60.98 | 37.59 |
Protein Annotations
| MapMan:35.2 | EntrezGene:8074206 | UniProt:C5X8D8 | EnsemblPlants:EER99354 | ProteinID:EER99354 | ProteinID:EER99354.1 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005747 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0031966 | GO:GO:0045271 | PANTHER:PTHR34286 | PANTHER:PTHR34286:SF3 |
| EnsemblPlantsGene:SORBI_3002G296200 | unigene:Sbi.3103 | TMHMM:TMhelix | UniParc:UPI000182AE30 | RefSeq:XP_002462833.1 | SEG:seg |
Description
hypothetical protein
Coordinates
chr2:-:67318556..67321047
Molecular Weight (calculated)
9248.3 Da
IEP (calculated)
10.180
GRAVY (calculated)
-0.441
Length
82 amino acids
Sequence
(BLAST)
(BLAST)
1: MGGDHGGGHA GGDFRQKVWS MTGGPYCRPV HWRRNTAIAM FGVFLICIPI AMKSAELEQR PHHPVRPIPS QLWCKNFGKK EY
1: MGGGDHGHGA EGGDFRAKVW SMTGGPNCRP KHWRRNTAIA MFGVFLVCIP IAKLSAKLEQ RPHMPVRPIP SQIWCKNFGT KDDYEKEH
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q8VZT9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.