Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 3
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G373000.1 | Wheat | cytosol | 100.0 | 100.0 |
| TraesCS5B01G366000.1 | Wheat | cytosol | 100.0 | 100.0 |
| HORVU5Hr1G089380.1 | Barley | cytosol | 100.0 | 100.0 |
| Os09t0560300-01 | Rice | cytosol, plasma membrane, plastid | 93.98 | 93.98 |
| EER99354 | Sorghum | cytosol, mitochondrion, peroxisome | 92.77 | 93.9 |
| Zm00001d006336_P001 | Maize | cytosol | 91.57 | 93.83 |
| GSMUA_Achr8P03520_001 | Banana | mitochondrion | 66.27 | 88.71 |
| VIT_16s0100g01290.t01 | Wine grape | cytosol | 79.52 | 82.5 |
| GSMUA_Achr9P25090_001 | Banana | cytosol | 84.34 | 80.46 |
| VIT_15s0046g03680.t01 | Wine grape | cytosol | 78.31 | 78.31 |
| PGSC0003DMT400037074 | Potato | cytosol | 74.7 | 76.54 |
| Solyc03g025910.2.1 | Tomato | cytosol | 74.7 | 76.54 |
| KRH00688 | Soybean | cytosol | 80.72 | 76.14 |
| CDY51150 | Canola | cytosol | 75.9 | 74.12 |
| Bra037348.1-P | Field mustard | extracellular, golgi, mitochondrion | 75.9 | 74.12 |
| CDX74341 | Canola | cytosol | 74.7 | 73.81 |
| KRH40506 | Soybean | cytosol | 79.52 | 73.33 |
| Bra000966.1-P | Field mustard | cytosol, extracellular, mitochondrion | 74.7 | 72.09 |
| AT4G00585.1 | Thale cress | cytosol | 75.9 | 71.59 |
| CDY31618 | Canola | cytosol | 74.7 | 71.26 |
| Bra017857.1-P | Field mustard | cytosol, extracellular, mitochondrion | 73.49 | 70.11 |
| CDX91903 | Canola | cytosol, extracellular, golgi | 73.49 | 61.62 |
| CDX72659 | Canola | mitochondrion, nucleus | 74.7 | 43.06 |
| CDY07208 | Canola | extracellular, golgi, plasma membrane | 60.24 | 37.59 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G364100.1 | EnsemblPlantsGene:TraesCS5A01G364100 | PANTHER:PTHR34286 | PANTHER:PTHR34286:SF3 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr5A:+:564495823..564498054
Molecular Weight (calculated)
9313.4 Da
IEP (calculated)
10.180
GRAVY (calculated)
-0.470
Length
83 amino acids
Sequence
(BLAST)
(BLAST)
1: MGGDHGGHGP SGGDFRQKVW SMTGGPYCRP VHWRRNTAIA MVGIFLVCIP IAMKSAELEQ RPHHPVRPIP SQLWCKNFGK KEY
1: MGGGDHGHGA EGGDFRAKVW SMTGGPNCRP KHWRRNTAIA MFGVFLVCIP IAKLSAKLEQ RPHMPVRPIP SQIWCKNFGT KDDYEKEH
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q8VZT9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.