Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017857.1-P | Field mustard | cytosol, extracellular, mitochondrion | 97.7 | 97.7 |
| CDX74341 | Canola | cytosol | 90.8 | 94.05 |
| CDY51150 | Canola | cytosol | 89.66 | 91.76 |
| AT4G00585.1 | Thale cress | cytosol | 86.21 | 85.23 |
| VIT_16s0100g01290.t01 | Wine grape | cytosol | 74.71 | 81.25 |
| VIT_15s0046g03680.t01 | Wine grape | cytosol | 75.86 | 79.52 |
| GSMUA_Achr8P03520_001 | Banana | mitochondrion | 56.32 | 79.03 |
| Zm00001d006336_P001 | Maize | cytosol | 72.41 | 77.78 |
| EER99354 | Sorghum | cytosol, mitochondrion, peroxisome | 72.41 | 76.83 |
| Os09t0560300-01 | Rice | cytosol, plasma membrane, plastid | 72.41 | 75.9 |
| Solyc03g025910.2.1 | Tomato | cytosol | 70.11 | 75.31 |
| PGSC0003DMT400037074 | Potato | cytosol | 70.11 | 75.31 |
| KRH00688 | Soybean | cytosol | 75.86 | 75.0 |
| HORVU5Hr1G089380.1 | Barley | cytosol | 71.26 | 74.7 |
| TraesCS5A01G364100.1 | Wheat | cytosol | 71.26 | 74.7 |
| TraesCS5B01G366000.1 | Wheat | cytosol | 71.26 | 74.7 |
| TraesCS5D01G373000.1 | Wheat | cytosol | 71.26 | 74.7 |
| KRH40506 | Soybean | cytosol | 77.01 | 74.44 |
| GSMUA_Achr9P25090_001 | Banana | cytosol | 73.56 | 73.56 |
| CDX91903 | Canola | cytosol, extracellular, golgi | 79.31 | 69.7 |
| CDX72659 | Canola | mitochondrion, nucleus | 93.1 | 56.25 |
| Zm00001d021375_P002 | Maize | cytosol, extracellular, golgi | 51.72 | 53.57 |
| CDY07208 | Canola | extracellular, golgi, plasma membrane | 60.92 | 39.85 |
| HORVU0Hr1G013700.1 | Barley | cytosol, mitochondrion | 51.72 | 34.09 |
Protein Annotations
| EnsemblPlants:CDY31618 | EnsemblPlantsGene:GSBRNA2T00050158001 | PANTHER:PTHR34286 | PANTHER:PTHR34286:SF3 | ProteinID:CDY31618 | ProteinID:CDY31618.1 |
| SEG:seg | UniParc:UPI0004EEED70 | UniProt:A0A078H472 | MapMan:35.2 | : | : |
Description
BnaA03g54340DBnaA03g54340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H472]
Coordinates
chrLK032275:-:425351..426166
Molecular Weight (calculated)
9912.0 Da
IEP (calculated)
9.359
GRAVY (calculated)
-0.603
Length
87 amino acids
Sequence
(BLAST)
(BLAST)
1: MGGAEHGHGH GGDFRAKVWS MSGGPYCRPK HWRRNTAFAM FGVFLVCIPI AMKSAELEQR PHMPVRPIPS QIWCKNFGTK DDYEKEH
1: MGGGDHGHGA EGGDFRAKVW SMTGGPNCRP KHWRRNTAIA MFGVFLVCIP IAKLSAKLEQ RPHMPVRPIP SQIWCKNFGT KDDYEKEH
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q8VZT9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.