Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 2
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51150 | Canola | cytosol | 42.11 | 65.88 |
| CDX74341 | Canola | cytosol | 41.35 | 65.48 |
| Bra037348.1-P | Field mustard | extracellular, golgi, mitochondrion | 41.35 | 64.71 |
| Zm00001d006336_P001 | Maize | cytosol | 37.59 | 61.73 |
| Os09t0560300-01 | Rice | cytosol, plasma membrane, plastid | 38.35 | 61.45 |
| EER99354 | Sorghum | cytosol, mitochondrion, peroxisome | 37.59 | 60.98 |
| CDY31618 | Canola | cytosol | 39.85 | 60.92 |
| HORVU5Hr1G089380.1 | Barley | cytosol | 37.59 | 60.24 |
| TraesCS5D01G373000.1 | Wheat | cytosol | 37.59 | 60.24 |
| TraesCS5B01G366000.1 | Wheat | cytosol | 37.59 | 60.24 |
| TraesCS5A01G364100.1 | Wheat | cytosol | 37.59 | 60.24 |
| GSMUA_Achr8P03520_001 | Banana | mitochondrion | 27.07 | 58.06 |
| CDX91903 | Canola | cytosol, extracellular, golgi | 42.86 | 57.58 |
| VIT_16s0100g01290.t01 | Wine grape | cytosol | 34.59 | 57.5 |
| VIT_15s0046g03680.t01 | Wine grape | cytosol | 35.34 | 56.63 |
| Zm00001d021375_P002 | Maize | cytosol, extracellular, golgi | 35.34 | 55.95 |
| KRH00688 | Soybean | cytosol | 36.84 | 55.68 |
| GSMUA_Achr9P25090_001 | Banana | cytosol | 36.09 | 55.17 |
| KRH40506 | Soybean | cytosol | 36.84 | 54.44 |
| Solyc03g025910.2.1 | Tomato | cytosol | 33.08 | 54.32 |
| PGSC0003DMT400037074 | Potato | cytosol | 33.08 | 54.32 |
| AT4G00585.1 | Thale cress | cytosol | 35.34 | 53.41 |
| CDX72659 | Canola | mitochondrion, nucleus | 40.6 | 37.5 |
| HORVU0Hr1G013700.1 | Barley | cytosol, mitochondrion | 30.08 | 30.3 |
Protein Annotations
| EnsemblPlants:CDY07208 | EnsemblPlantsGene:GSBRNA2T00123567001 | GO:A0A078F6C0 | PANTHER:PTHR34286 | PANTHER:PTHR34286:SF3 | ProteinID:CDY07208 |
| ProteinID:CDY07208.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EACE6E | MapMan:35.2 | : |
Description
BnaCnng02230D
Coordinates
chrLK031975:+:815442..817540
Molecular Weight (calculated)
14626.0 Da
IEP (calculated)
9.931
GRAVY (calculated)
0.147
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGGAGGEGG DFRAKVWSMS GGPYCRPKHW RRNTAFAMLG VFLVCIPIAM KSAELEIALF YLLHKNVVMC RKYGLEIAKA AHARTSNSFS DLVQELWNQG
101: RLRKRALKTL VLLAVETTLF GLVSCFADDN VSA
101: RLRKRALKTL VLLAVETTLF GLVSCFADDN VSA
1: MGGGDHGHGA EGGDFRAKVW SMTGGPNCRP KHWRRNTAIA MFGVFLVCIP IAKLSAKLEQ RPHMPVRPIP SQIWCKNFGT KDDYEKEH
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q8VZT9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.