Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER99354 | Sorghum | cytosol, mitochondrion, peroxisome | 100.0 | 98.78 |
| Os09t0560300-01 | Rice | cytosol, plasma membrane, plastid | 96.3 | 93.98 |
| TraesCS5A01G364100.1 | Wheat | cytosol | 93.83 | 91.57 |
| HORVU5Hr1G089380.1 | Barley | cytosol | 93.83 | 91.57 |
| TraesCS5B01G366000.1 | Wheat | cytosol | 93.83 | 91.57 |
| TraesCS5D01G373000.1 | Wheat | cytosol | 93.83 | 91.57 |
| VIT_16s0100g01290.t01 | Wine grape | cytosol | 85.19 | 86.25 |
| GSMUA_Achr8P03520_001 | Banana | mitochondrion | 65.43 | 85.48 |
| VIT_15s0046g03680.t01 | Wine grape | cytosol | 82.72 | 80.72 |
| GSMUA_Achr9P25090_001 | Banana | cytosol | 83.95 | 78.16 |
| KRH00688 | Soybean | cytosol | 83.95 | 77.27 |
| KRH40506 | Soybean | cytosol | 85.19 | 76.67 |
| CDY51150 | Canola | cytosol | 77.78 | 74.12 |
| Bra037348.1-P | Field mustard | extracellular, golgi, mitochondrion | 77.78 | 74.12 |
| PGSC0003DMT400037074 | Potato | cytosol | 74.07 | 74.07 |
| Solyc03g025910.2.1 | Tomato | cytosol | 74.07 | 74.07 |
| CDX74341 | Canola | cytosol | 76.54 | 73.81 |
| AT4G00585.1 | Thale cress | cytosol | 79.01 | 72.73 |
| CDY31618 | Canola | cytosol | 77.78 | 72.41 |
| Bra000966.1-P | Field mustard | cytosol, extracellular, mitochondrion | 76.54 | 72.09 |
| Bra017857.1-P | Field mustard | cytosol, extracellular, mitochondrion | 76.54 | 71.26 |
| Zm00001d021375_P002 | Maize | cytosol, extracellular, golgi | 71.6 | 69.05 |
| CDX91903 | Canola | cytosol, extracellular, golgi | 75.31 | 61.62 |
| CDX72659 | Canola | mitochondrion, nucleus | 77.78 | 43.75 |
| CDY07208 | Canola | extracellular, golgi, plasma membrane | 61.73 | 37.59 |
Protein Annotations
| EMBL:EU956000 | EnsemblPlants:Zm00001d006336_P001 | EnsemblPlants:Zm00001d006336_T001 | EnsemblPlantsGene:Zm00001d006336 | EntrezGene:100275447 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005747 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0031966 | GO:GO:0045271 | PANTHER:PTHR34286 | PANTHER:PTHR34286:SF3 | ProteinID:ONM23542.1 |
| SEG:seg | UniParc:UPI000182B357 | UniProt:B6STD5 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr2:-:204951629..204962354
Molecular Weight (calculated)
9120.1 Da
IEP (calculated)
9.870
GRAVY (calculated)
-0.399
Length
81 amino acids
Sequence
(BLAST)
(BLAST)
1: MGGDHGGGHA GGDFRQKVWS MTGGPYCRPV HWRRNTAIAM FGVFLICIPI AMKSAELEQR PHHPVRPIPS QLWCKNFGKE Y
1: MGGGDHGHGA EGGDFRAKVW SMTGGPNCRP KHWRRNTAIA MFGVFLVCIP IAKLSAKLEQ RPHMPVRPIP SQIWCKNFGT KDDYEKEH
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q8VZT9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.