Factsheet for Bra004012.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 7
vacuole 8
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027469.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26000.1	Bra027469.1-P	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07361	Canola	endoplasmic reticulum	99.26	99.26
Bra016676.1-P	Field mustard	endoplasmic reticulum, vacuole	87.55	87.55
Bra039823.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	79.37	77.36
Bra039825.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	79.37	77.36
Bra020549.1-P	Field mustard	cytosol	34.76	71.37
Bra020523.1-P	Field mustard	cytosol	40.33	70.92
Bra032343.1-P	Field mustard	cytosol	43.87	70.45
Bra039705.1-P	Field mustard	vacuole	68.96	68.2
AT5G26000.1	Thale cress	endoplasmic reticulum, vacuole	67.84	67.47
Bra023838.1-P	Field mustard	endoplasmic reticulum, vacuole	63.38	66.21
Bra038094.1-P	Field mustard	cytosol	49.81	62.33
Bra036914.1-P	Field mustard	cytosol	32.16	52.91
Bra030473.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	43.68	45.63
Bra014287.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	42.38	45.24
Bra020551.1-P	Field mustard	cytosol	10.59	44.53

Protein Annotations

EnsemblPlants:Bra004012.1	EnsemblPlants:Bra004012.1-P	EnsemblPlantsGene:Bra004012	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_1
InterPro:Glycoside_hydrolase_SF	PANTHER:PTHR10353	PANTHER:PTHR10353:SF44	PFAM:PF00232	PFscan:PS51257	PRINTS:PR00131
SignalP:SignalP-noTM	SUPFAM:SSF51445	UniParc:UPI00025419E0	UniProt:M4CIH8	MapMan:9.5.2.1	:

Description

AT5G26000 (E=2e-218) TGG1, BGLU38 | TGG1 (THIOGLUCOSIDE GLUCOHYDROLASE 1); hydrolase, hydrolyzing O-glycosyl compounds / thioglucosidase

Coordinates

chrA07:+:16289801..16293283

Molecular Weight (calculated)

61500.1 Da

IEP (calculated)

8.900

GRAVY (calculated)

-0.418

Length

538 amino acids

Sequence
(BLAST)

001: MKLRGLVLIV FLLAVVSCKA NGEITCEENE PFTCNNTARL NSKGFPKDFI FGVASSAYQA CGRGRGLNVW DGFTHRYPEK GGPDLGNGDT TCESYTKWQK
101: DIDILDEMNA TGYRFSFAWS RIIPEGKVSR GVNKGGLKYY HKLIDGLIAK NITPFVTLYH WDIPQTLQDE YQGFLNRQVI DDFRDFADLC FKEFGGKVKN
201: WLTLNQLYTV PTRGYSTAGA DAPGRCSPKV DERCYGGNSS TEPYIVAHNQ LLAHAAVFQR GIIGPVMITR WFLPFNETDR ASIDATERMK EFFFGWYMEP
301: LTRGRYPDIM RRMVGNRLPN FTEAEARLVA GSYDFLGLNY YVGQYVQPAP NPLPVTSERY TAMMDPGTTL TSVNARGEKI GPLFEDFQGS RIYYYPKGIY
401: YVMDHFRTRY RNPLIYVTEN GFTTPASENR PEAVADSKRI DYLCSHLCFL RKVIREKRVN IKGYFAWSLG DNYEFAKGFA VRFGLTYVNW TDVSDRNLKD
501: SGRWYQRFIN VTSKNTANED FLRSSLSFKN KMKTLADA

Best Arabidopsis Sequence Match ( AT5G26000.1 )
(BLAST)

001: MKLLMLAFVF LLALATCKGD EFVCEENEPF TCNQTKLFNS GNFEKGFIFG VASSAYQVEG GRGRGLNVWD SFTHRFPEKG GADLGNGDTT CDSYTLWQKD
101: IDVMDELNST GYRFSIAWSR LLPKGKRSRG VNPGAIKYYN GLIDGLVAKN MTPFVTLFHW DLPQTLQDEY NGFLNKTIVD DFKDYADLCF ELFGDRVKNW
201: ITINQLYTVP TRGYALGTDA PGRCSPKIDV RCPGGNSSTE PYIVAHNQLL AHAAAVDVYR TKYKDDQKGM IGPVMITRWF LPFDHSQESK DATERAKIFF
301: HGWFMGPLTE GKYPDIMREY VGDRLPEFSE TEAALVKGSY DFLGLNYYVT QYAQNNQTIV PSDVHTALMD SRTTLTSKNA TGHAPGPPFN AASYYYPKGI
401: YYVMDYFKTT YGDPLIYVTE NGFSTPGDED FEKATADYKR IDYLCSHLCF LSKVIKEKNV NVKGYFAWSL GDNYEFCNGF TVRFGLSYVD FANITGDRDL
501: KASGKWFQKF INVTDEDSTN QDLLRSSVSS KNRDRKSLAD A

Arabidopsis Description

TGG1TGG1 [Source:UniProtKB/TrEMBL;Acc:A0A178U7L7]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.