Factsheet for Bra020523.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
vacuole 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027469.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26000.1	Bra027469.1-P	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020549.1-P	Field mustard	cytosol	56.86	66.41
Bra020551.1-P	Field mustard	cytosol	25.49	60.94
CDY24999	Canola	cytosol, mitochondrion	36.93	55.66
Bra032343.1-P	Field mustard	cytosol	55.56	50.75
CDY70871	Canola	mitochondrion, vacuole	35.95	48.25
Bra038094.1-P	Field mustard	cytosol	65.69	46.74
Bra039825.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	80.72	44.75
Bra039823.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	80.72	44.75
Bra016676.1-P	Field mustard	endoplasmic reticulum, vacuole	72.88	41.45
AT5G26000.1	Thale cress	endoplasmic reticulum, vacuole	72.22	40.85
Bra039705.1-P	Field mustard	vacuole	72.22	40.62
Bra004012.1-P	Field mustard	endoplasmic reticulum	70.92	40.33
Bra023838.1-P	Field mustard	endoplasmic reticulum, vacuole	67.32	40.0
Bra036914.1-P	Field mustard	cytosol	37.25	34.86
CDY22730	Canola	mitochondrion	42.81	28.98
CDX90772	Canola	mitochondrion	54.25	28.04
Bra014287.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	41.83	25.4
Bra030473.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	42.16	25.05

Protein Annotations

Gene3D:3.20.20.80	MapMan:50.3.2	EnsemblPlantsGene:Bra020523	EnsemblPlants:Bra020523.1	EnsemblPlants:Bra020523.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
InterPro:Glyco_hydro_1	InterPro:Glyco_hydro_1_AS	InterPro:Glycoside_hydrolase_SF	UniProt:M4DVH9	PFAM:PF00232	PRINTS:PR00131
ScanProsite:PS00572	PANTHER:PTHR10353	PANTHER:PTHR10353:SF44	SUPFAM:SSF51445	UniParc:UPI0002546E6B	SEG:seg

Description

AT5G26000 (E=2e-056) TGG1, BGLU38 | TGG1 (THIOGLUCOSIDE GLUCOHYDROLASE 1); hydrolase, hydrolyzing O-glycosyl compounds / thioglucosidase

Coordinates

chrA02:+:24800221..24802382

Molecular Weight (calculated)

35644.4 Da

IEP (calculated)

8.898

GRAVY (calculated)

-0.473

Length

306 amino acids

Sequence
(BLAST)

001: MGELNATGYR FSFAWSRIIP ITCINEMILY NMHRQDFKDY ADLCFKEFGG KVKHWITINQ LYTVPTRGYA VGTDAPGRCS PMVDTKHRCY GGNSSTEPYI
101: VAHNQLLAHA TVVDLYRTKY KFQKGKIGPV MITRWFLPFD ESDPASIEAA ERMNQFFHGC YYYPKGIYYV MDYFKTKYGD PLIYVTENGF STPSEENREQ
201: AIADYKRIDY LCSHLCFLRK VIKEKGVNVR GYFAWALGDN YEFCKGFTVR FGLSYVNWED LDDRNLKESG KWYQRFINGT VKNAVKQDFL RSSLSSQSQK
301: KRFADA

Best Arabidopsis Sequence Match ( AT5G25980.1 )
(BLAST)

001: MQHNTYIYIL TMKLLGFALA ILLVVATCKP EEEITCEENV PFTCSQTDRF NKQDFESDFI FGVASSAYQI EGGRGRGLNV WDGFTHRYPE KGGADLGNGD
101: TTCDSYRTWQ KDLDVMEELG VKGYRFSFAW SRILPKGKRS RGINEDGINY YSGLIDGLIA RNITPFVTLF HWDLPQSLQD EYEGFLDRTI IDDFKDYADL
201: CFERFGDRVK HWITINQLFT VPTRGYALGT DAPGRCSQWV DKRCYGGDSS TEPYIVAHNQ LLAHATVVDL YRTRYKYQGG KIGPVMITRW FLPYDDTLES
301: KQATWRAKEF FLGWFMEPLT KGKYPYIMRK LVGNRLPKFN STEARLLKGS YDFLGLNYYV TQYAHALDPS PPEKLTAMTD SLANLTSLDA NGQPPGPPFS
401: KGSYYHPRGM LNVMEHFKTK YGDPLIYVTE NGFSTSGGPI PFTEAFHDYN RIDYLCSHLC FLRKAIK

Arabidopsis Description

TGG2Myrosinase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5C2]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.