Factsheet for Bra023838.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 8
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027469.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26000.1	Bra027469.1-P	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39513	Canola	endoplasmic reticulum, vacuole	97.86	95.82
CDY46331	Canola	endoplasmic reticulum, vacuole	97.28	92.44
Bra039705.1-P	Field mustard	vacuole	82.14	77.76
Bra038094.1-P	Field mustard	cytosol	64.08	76.74
Bra020549.1-P	Field mustard	cytosol	34.37	67.56
Bra020523.1-P	Field mustard	cytosol	40.0	67.32
Bra032343.1-P	Field mustard	cytosol	42.72	65.67
Bra016676.1-P	Field mustard	endoplasmic reticulum, vacuole	67.57	64.68
Bra004012.1-P	Field mustard	endoplasmic reticulum	66.21	63.38
AT5G26000.1	Thale cress	endoplasmic reticulum, vacuole	65.24	62.11
Bra039823.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	65.83	61.41
Bra039825.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	65.83	61.41
Bra036914.1-P	Field mustard	cytosol	35.15	55.35
Bra014287.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	41.55	42.46
Bra030473.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	42.33	42.33
Bra020551.1-P	Field mustard	cytosol	9.13	36.72

Protein Annotations

Gene3D:3.20.20.80	MapMan:9.5.2.1	EnsemblPlantsGene:Bra023838	EnsemblPlants:Bra023838.1	EnsemblPlants:Bra023838.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
InterPro:Glyco_hydro_1	InterPro:Glyco_hydro_1_AS	InterPro:Glycoside_hydrolase_SF	UniProt:M4E4Y4	PFAM:PF00232	PRINTS:PR00131
ScanProsite:PS00572	PANTHER:PTHR10353	PANTHER:PTHR10353:SF44	SUPFAM:SSF51445	SignalP:SignalP-noTM	UniParc:UPI000254435B
SEG:seg	:	:	:	:	:

Description

AT5G26000 (E=4e-191) TGG1, BGLU38 | TGG1 (THIOGLUCOSIDE GLUCOHYDROLASE 1); hydrolase, hydrolyzing O-glycosyl compounds / thioglucosidase

Coordinates

chrA01:+:20332476..20335159

Molecular Weight (calculated)

58748.9 Da

IEP (calculated)

5.869

GRAVY (calculated)

-0.463

Length

515 amino acids

Sequence
(BLAST)

001: MKHLWLTLAF LLALATCKAD EEITCEENLP FTCGQTDRFN SSSFEKDFIF GLASSAYQAY KAGPDHGNGD TTCNSYSYWE KDIEVMDELK ATGYRFSIAW
101: SRIIPRGKRS RGVHQGGINY YHGLINGLID KGITPLVTLF HWDLPQVLQD DYEGFLDPQI IDDFRDFADL CFEEYGDKVK HWFTINQLYS VPTRGYGLGS
201: DAPGRCSPKV DSTCYAGNSS TEPYIVAHNQ LLAHATVHQG GKIGPVMITR WFLPYNDTDP DSIAATERMK EFFLGWYMGP LTNGTYPQIM IDTVGERLPS
301: FTPEESKLVK GSYDFLGLNY YFAQYVQPSP NHVDSDGHTA MMDAGTRLTY RNASNHAIGP VFTEHKDDET KNTYYYPKGI YYVMDHFKTN YNDPVIYITE
401: NGFSTSGDET REEAKFDYRR IDYLCSHLCF LSKVIKETGV KVKGYCAWSL GDNYEFGLGF TVRFGLTYID WNNVTDRDLK ESGKWYKKFI ATKNLAKPNF
501: LRSSLTFEKK KFADA

Best Arabidopsis Sequence Match ( AT5G25980.1 )
(BLAST)

001: MQHNTYIYIL TMKLLGFALA ILLVVATCKP EEEITCEENV PFTCSQTDRF NKQDFESDFI FGVASSAYQI EGGRGRGLNV WDGFTHRYPE KGGADLGNGD
101: TTCDSYRTWQ KDLDVMEELG VKGYRFSFAW SRILPKGKRS RGINEDGINY YSGLIDGLIA RNITPFVTLF HWDLPQSLQD EYEGFLDRTI IDDFKDYADL
201: CFERFGDRVK HWITINQLFT VPTRGYALGT DAPGRCSQWV DKRCYGGDSS TEPYIVAHNQ LLAHATVVDL YRTRYKYQGG KIGPVMITRW FLPYDDTLES
301: KQATWRAKEF FLGWFMEPLT KGKYPYIMRK LVGNRLPKFN STEARLLKGS YDFLGLNYYV TQYAHALDPS PPEKLTAMTD SLANLTSLDA NGQPPGPPFS
401: KGSYYHPRGM LNVMEHFKTK YGDPLIYVTE NGFSTSGGPI PFTEAFHDYN RIDYLCSHLC FLRKAIK

Arabidopsis Description

TGG2Myrosinase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5C2]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.