Factsheet for Bra039823.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 8
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027469.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26000.1	Bra027469.1-P	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039825.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	100.0	100.0
CDY71022	Canola	cytosol	94.02	97.01
Bra016676.1-P	Field mustard	endoplasmic reticulum, vacuole	79.53	81.6
Bra020523.1-P	Field mustard	cytosol	44.75	80.72
Bra004012.1-P	Field mustard	endoplasmic reticulum	77.36	79.37
Bra020549.1-P	Field mustard	cytosol	37.14	78.24
Bra032343.1-P	Field mustard	cytosol	46.74	77.01
Bra039705.1-P	Field mustard	vacuole	69.38	70.4
AT5G26000.1	Thale cress	endoplasmic reticulum, vacuole	68.66	70.06
Bra038094.1-P	Field mustard	cytosol	52.36	67.21
Bra023838.1-P	Field mustard	endoplasmic reticulum, vacuole	61.41	65.83
Bra036914.1-P	Field mustard	cytosol	34.96	59.02
Bra020551.1-P	Field mustard	cytosol	11.78	50.78
Bra014287.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	43.3	47.42
Bra030473.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	44.02	47.18

Protein Annotations

Gene3D:3.20.20.80	MapMan:9.5.2.1	EnsemblPlantsGene:Bra039823	EnsemblPlants:Bra039823.1	EnsemblPlants:Bra039823.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
InterPro:Glyco_hydro_1	InterPro:Glyco_hydro_1_AS	InterPro:Glycoside_hydrolase_SF	UniProt:M4FFF1	PFAM:PF00232	PRINTS:PR00131
ScanProsite:PS00572	PFscan:PS51257	PANTHER:PTHR10353	PANTHER:PTHR10353:SF44	SUPFAM:SSF51445	SignalP:SignalP-noTM
UniParc:UPI000253EAB4	:	:	:	:	:

Description

AT5G26000 (E=5e-227) TGG1, BGLU38 | TGG1 (THIOGLUCOSIDE GLUCOHYDROLASE 1); hydrolase, hydrolyzing O-glycosyl compounds / thioglucosidase

Coordinates

chrScaffold000178:+:79909..82554

Molecular Weight (calculated)

63048.5 Da

IEP (calculated)

8.506

GRAVY (calculated)

-0.517

Length

552 amino acids

Sequence
(BLAST)

001: MKLHGLALIG FLIAVVSCKA IEECRENEPF TCGNTDQLSS KSFPKDFIFG VASAAYQACY KSTIFDVEGG RGRGLNVWDG FTHRYPEKGG SDHGNGDTTC
101: ESYTRWQKDI DIIDELNATG YRFSFAWSRI IPKGKVSRGV NKGGIEYYHK LLDGLIAKNI TPFVTLYHWD LPQTLQDEYE GFLNRTVIDD FRDYADLCFK
201: EFGGKVKNWI TINQLYTVPT RGYAIGTDAP GRCSPAVDER CYGGNSSTEP YIVAHNQLLA HAAAVDVYRR KYKFQKGKIG PVMITRWFLP FDETDASRDA
301: AERMKEFFLG WFMEPLTKGR YPDIMREIVG SRLPNFTEAE AELVAGSYDF LGLNYYTTQY AQAKPNPVTW ANHTAMMDPG AKLTYNNSRG ENLGPLFVKD
401: EKNGNAYYYP KGIYYVMDYF KTKYSNPLIY ITENGFSTPG EENRDKAIAD SKRIDYLCSH LCFLRKVIRE KGVNIKGYFA WALGDNYEFC KGFTVRFGLS
501: YVNWTDLNDR NLKDSGKWYQ SFINGTNKNP AKQYFRRPNL SFQNQKKKLA DA

Best Arabidopsis Sequence Match ( AT5G26000.1 )
(BLAST)

001: MKLLMLAFVF LLALATCKGD EFVCEENEPF TCNQTKLFNS GNFEKGFIFG VASSAYQVEG GRGRGLNVWD SFTHRFPEKG GADLGNGDTT CDSYTLWQKD
101: IDVMDELNST GYRFSIAWSR LLPKGKRSRG VNPGAIKYYN GLIDGLVAKN MTPFVTLFHW DLPQTLQDEY NGFLNKTIVD DFKDYADLCF ELFGDRVKNW
201: ITINQLYTVP TRGYALGTDA PGRCSPKIDV RCPGGNSSTE PYIVAHNQLL AHAAAVDVYR TKYKDDQKGM IGPVMITRWF LPFDHSQESK DATERAKIFF
301: HGWFMGPLTE GKYPDIMREY VGDRLPEFSE TEAALVKGSY DFLGLNYYVT QYAQNNQTIV PSDVHTALMD SRTTLTSKNA TGHAPGPPFN AASYYYPKGI
401: YYVMDYFKTT YGDPLIYVTE NGFSTPGDED FEKATADYKR IDYLCSHLCF LSKVIKEKNV NVKGYFAWSL GDNYEFCNGF TVRFGLSYVD FANITGDRDL
501: KASGKWFQKF INVTDEDSTN QDLLRSSVSS KNRDRKSLAD A

Arabidopsis Description

TGG1TGG1 [Source:UniProtKB/TrEMBL;Acc:A0A178U7L7]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.