Factsheet for Bra016676.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 8
plasma membrane 5
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027469.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26000.1	Bra027469.1-P	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52022	Canola	cytosol	95.35	96.61
CDY72290	Canola	cytosol, mitochondrion, vacuole	32.53	94.09
Bra004012.1-P	Field mustard	endoplasmic reticulum	87.55	87.55
Bra039823.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	81.6	79.53
Bra039825.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	81.6	79.53
Bra020549.1-P	Field mustard	cytosol	35.5	72.9
Bra020523.1-P	Field mustard	cytosol	41.45	72.88
Bra032343.1-P	Field mustard	cytosol	45.17	72.54
Bra039705.1-P	Field mustard	vacuole	69.33	68.57
Bra023838.1-P	Field mustard	endoplasmic reticulum, vacuole	64.68	67.57
AT5G26000.1	Thale cress	endoplasmic reticulum, vacuole	67.29	66.91
Bra038094.1-P	Field mustard	cytosol	51.3	64.19
Bra036914.1-P	Field mustard	cytosol	33.09	54.43
Bra020551.1-P	Field mustard	cytosol	10.97	46.09
Bra030473.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	43.49	45.44
Bra014287.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	42.38	45.24

Protein Annotations

Gene3D:3.20.20.80	MapMan:9.5.2.1	EnsemblPlantsGene:Bra016676	EnsemblPlants:Bra016676.1	EnsemblPlants:Bra016676.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
InterPro:Glyco_hydro_1	InterPro:Glyco_hydro_1_AS	InterPro:Glycoside_hydrolase_SF	UniProt:M4DJJ8	PFAM:PF00232	PRINTS:PR00131
ScanProsite:PS00572	PFscan:PS51257	PANTHER:PTHR10353	PANTHER:PTHR10353:SF44	SUPFAM:SSF51445	SignalP:SignalP-noTM
UniParc:UPI0002545A84	:	:	:	:	:

Description

AT5G26000 (E=2e-217) TGG1, BGLU38 | TGG1 (THIOGLUCOSIDE GLUCOHYDROLASE 1); hydrolase, hydrolyzing O-glycosyl compounds / thioglucosidase

Coordinates

chrA08:-:19519187..19521880

Molecular Weight (calculated)

61734.3 Da

IEP (calculated)

8.578

GRAVY (calculated)

-0.467

Length

538 amino acids

Sequence
(BLAST)

001: MKFRGLDLIV FLLAVVSCKA NKEITCEENE PFTCNNTDRL NSKGFPKDFI FGVSSAAYQA CGRGRGLNIW DGFTHRYPEK GGSDLGNGDT TCESYTMWQK
101: DIDIMDEMNA TGYRFSFAWS RIIPKGKVSR GVNKGGLEYY HRLIDGLIAK NITPFVTLYH WDLPQTLQDE YDGFLNRQVI EDFRDFADLC FKEFGGKVKN
201: WLTINQLYSV PTRGYSTGAD APGRCSPKVD ARCYGGNSST EPYIVAHNQL LAHAAVQFQR GRIGPVMITR WFLPFDETNK ASIDAAERMK EFFLGWYMEP
301: LTRGRYPDIM RRMVGNRLPN FTEAEARLVA GSYDFLGLNY YATQYVQPTP NPLPVTSERY TAMMDPGTRL TFVNSRGEKT GPLFEELKGE NSYYYPKGIY
401: YVMDYFKTKY RNPLIYITEN GFSTSGDQTR QEAVADSKRI DYLCSHLCFL RKVIMEKRVN IKGYFAWALG DNYEFGKGFT VRFGLSYVNW TDVSDRNLKD
501: SGKWYQRFIN VTTKITAHQD FLRSGLSFEN KMKTLTDA

Best Arabidopsis Sequence Match ( AT5G26000.1 )
(BLAST)

001: MKLLMLAFVF LLALATCKGD EFVCEENEPF TCNQTKLFNS GNFEKGFIFG VASSAYQVEG GRGRGLNVWD SFTHRFPEKG GADLGNGDTT CDSYTLWQKD
101: IDVMDELNST GYRFSIAWSR LLPKGKRSRG VNPGAIKYYN GLIDGLVAKN MTPFVTLFHW DLPQTLQDEY NGFLNKTIVD DFKDYADLCF ELFGDRVKNW
201: ITINQLYTVP TRGYALGTDA PGRCSPKIDV RCPGGNSSTE PYIVAHNQLL AHAAAVDVYR TKYKDDQKGM IGPVMITRWF LPFDHSQESK DATERAKIFF
301: HGWFMGPLTE GKYPDIMREY VGDRLPEFSE TEAALVKGSY DFLGLNYYVT QYAQNNQTIV PSDVHTALMD SRTTLTSKNA TGHAPGPPFN AASYYYPKGI
401: YYVMDYFKTT YGDPLIYVTE NGFSTPGDED FEKATADYKR IDYLCSHLCF LSKVIKEKNV NVKGYFAWSL GDNYEFCNGF TVRFGLSYVD FANITGDRDL
501: KASGKWFQKF INVTDEDSTN QDLLRSSVSS KNRDRKSLAD A

Arabidopsis Description

TGG1TGG1 [Source:UniProtKB/TrEMBL;Acc:A0A178U7L7]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.