CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

cytosol: 16847873

msms PMID: 16847873 doi

V Katavic, GK Agrawal, M Hajduch, SL Harris, JJ Thelen

University of Missouri-Columbia, Department of Biochemistry, Columbia 65211, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26000.1	CDY32970	AT5G42980.1	15352244
AT5G26000.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016676.1-P	Field mustard	endoplasmic reticulum, vacuole	96.61	95.35
CDY72290	Canola	cytosol, mitochondrion, vacuole	32.96	94.09
CDY04261	Canola	vacuole	63.09	87.93
CDY07361	Canola	endoplasmic reticulum	85.5	84.39
CDY71022	Canola	cytosol	80.04	79.44
CDY37226	Canola	extracellular	81.92	78.66
CDY70871	Canola	mitochondrion, vacuole	32.39	75.44
CDY67046	Canola	extracellular	76.84	74.73
CDY26308	Canola	cytosol	76.46	74.5
CDY05334	Canola	cytosol	72.32	72.87
CDY65716	Canola	cytosol	18.64	72.79
CDY29614	Canola	cytosol, peroxisome, vacuole	12.05	68.82
CDY24995	Canola	cytosol, plastid, vacuole	43.31	68.25
CDY22724	Canola	cytosol	69.49	67.58
CDY24999	Canola	cytosol, mitochondrion	25.61	67.0
CDY46331	Canola	endoplasmic reticulum, vacuole	68.36	66.97
CDY09042	Canola	vacuole	66.48	66.86
CDY39513	Canola	endoplasmic reticulum, vacuole	66.1	66.73
AT5G26000.1	Thale cress	endoplasmic reticulum, vacuole	67.8	66.54
CDY24996	Canola	cytosol	21.85	65.91
CDY68654	Canola	cytosol	22.22	65.56
CDY09054	Canola	vacuole	58.19	62.8
CDY22731	Canola	cytosol	19.77	59.66
CDY52412	Canola	cytosol	9.6	57.3
CDY71771	Canola	cytosol, vacuole	39.36	57.26
CDX90772	Canola	mitochondrion	51.98	46.62
CDY46560	Canola	cytosol, vacuole	8.66	46.0
CDY22730	Canola	mitochondrion	37.66	44.25
CDY29604	Canola	mitochondrion, plastid, vacuole	12.43	39.29
CDX87822	Canola	plasma membrane	9.04	38.1
CDY67044	Canola	cytosol	0.75	23.53

Protein Annotations

Gene3D:3.20.20.80	MapMan:9.5.2.1	GO:A0A078IQ70	UniProt:A0A078IQ70	EnsemblPlants:CDY52022	ProteinID:CDY52022
ProteinID:CDY52022.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00004725001	InterPro:Glyco_hydro_1	InterPro:Glyco_hydro_1_AS	InterPro:Glycoside_hydrolase_SF
PFAM:PF00232	PRINTS:PR00131	ScanProsite:PS00572	PFscan:PS51257	PANTHER:PTHR10353	PANTHER:PTHR10353:SF44
SUPFAM:SSF51445	SignalP:SignalP-noTM	UniParc:UPI0004EE15D5	:	:	:

Description

BnaA08g31350DBnaA08g31350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IQ70]

Coordinates

chrLK033048:-:18680..21530

Molecular Weight (calculated)

60930.4 Da

IEP (calculated)

8.815

GRAVY (calculated)

-0.452

Length

531 amino acids

Sequence
(BLAST)

001: MKFRGLDLIV FLLAVVSCKA NKEITCEENE PFTCNNTDRL NSKGFPKDFI FGVSSAAYQA CGRGRGLNIW DGFTHRYPEK GGSDLGNGDT TCESYTMWQK
101: DIDIMDEMNA TGYRFSFAWS RIIPKGKVSR GVNKGGLEYY HRLIDGLIAK NITPFVTLYH WDLPQTLQDE YDGFLNRQVI EDFRDFADLC FKEFGGKVKN
201: WLTINQLYSV PTRGYSTGAD APGRCSPKVD ARCYGGNSST EPYIVAHNQL LAHAAVVNLY RTKYRASTCP FFQRGRIGPV MITRWFLPFD ETNKASIDAA
301: ERMKEFFLGW YMEPLTRGRY PDIMRRMVGN RLPNFTEAEA RLVAGSYDFL GLNYYATQYV QPTPNPLPVT SERYTAMMDP GTRLTFVNSR GEKTGPLFEE
401: LKGGNSYYYP KGIYYVMDYF KTKYRNPLIY ITENGFSTSG DQTRQEAVAD SKRIDYLCSH LCFLRKVIME KRVNIKGYFA WALGDNYEFG KGFTVRFGLS
501: YVNWTDVSDR NLKDSGKWYQ RFINMKTLAD A

Best Arabidopsis Sequence Match ( AT5G25980.2 )
(BLAST)

001: MQHNTYIYIL TMKLLGFALA ILLVVATCKP EEEITCEENV PFTCSQTDRF NKQDFESDFI FGVASSAYQI EGGRGRGLNV WDGFTHRYPE KGGADLGNGD
101: TTCDSYRTWQ KDLDVMEELG VKGYRFSFAW SRILPKGKRS RGINEDGINY YSGLIDGLIA RNITPFVTLF HWDLPQSLQD EYEGFLDRTI IDDFKDYADL
201: CFERFGDRVK HWITINQLFT VPTRGYALGT DAPGRCSQWV DKRCYGGDSS TEPYIVAHNQ LLAHATVVDL YRTRYKYQGG KIGPVMITRW FLPYDDTLES
301: KQATWRAKEF FLGWFMEPLT KGKYPYIMRK LVGNRLPKFN STEARLLKGS YDFLGLNYYV TQYAHALDPS PPEKLTAMTD SLANLTSLDA NGQPPGPPFS
401: KGSYYHPRGM LNVMEHFKTK YGDPLIYVTE NGFSTSGGPI PFTEAFHDYN RIDYLCSHLC FLRKAIKEKR VNVKGYFVWS LGDNYEFCNG YTVRFGLSYV
501: DFNNVTADRD LKASGLWYQS FLRDTTKNQD ILRSSLPFKN GDRKSLT

Arabidopsis Description

TGG2Myrosinase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5C2]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.