CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	endoplasmic reticulum

cytosol: 16847873
extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

msms PMID: 16847873 doi

V Katavic, GK Agrawal, M Hajduch, SL Harris, JJ Thelen

University of Missouri-Columbia, Department of Biochemistry, Columbia 65211, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26000.1	CDY32970	AT5G42980.1	15352244
AT5G26000.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71022	Canola	cytosol	91.68	94.77
CDY72290	Canola	cytosol, mitochondrion, vacuole	29.11	86.56
CDY52412	Canola	cytosol	13.56	84.27
CDY52022	Canola	cytosol	78.66	81.92
CDY67046	Canola	extracellular	80.29	81.32
CDY26308	Canola	cytosol	79.75	80.92
CDY05334	Canola	cytosol	76.13	79.89
CDY07361	Canola	endoplasmic reticulum	77.4	79.55
CDY70871	Canola	mitochondrion, vacuole	32.73	79.39
CDY04261	Canola	vacuole	54.61	79.27
CDY24996	Canola	cytosol	25.14	78.98
CDY68654	Canola	cytosol	25.68	78.89
CDY24995	Canola	cytosol, plastid, vacuole	46.84	76.85
CDY65716	Canola	cytosol	18.63	75.74
AT5G26000.1	Thale cress	endoplasmic reticulum, vacuole	69.08	70.61
CDY22724	Canola	cytosol	69.08	69.96
CDY24999	Canola	cytosol, mitochondrion	25.68	69.95
CDY09042	Canola	vacuole	66.18	69.32
CDY29614	Canola	cytosol, peroxisome, vacuole	11.57	68.82
CDY46331	Canola	endoplasmic reticulum, vacuole	65.64	66.97
CDY39513	Canola	endoplasmic reticulum, vacuole	63.29	66.54
CDY09054	Canola	vacuole	58.23	65.45
CDY22731	Canola	cytosol	20.8	65.34
CDY71771	Canola	cytosol, vacuole	38.7	58.63
CDX90772	Canola	mitochondrion	54.43	50.84
CDY22730	Canola	mitochondrion	38.34	46.9
CDY46560	Canola	cytosol, vacuole	7.96	44.0
CDX87822	Canola	plasma membrane	8.86	38.89
CDY29604	Canola	mitochondrion, plastid, vacuole	11.75	38.69
CDY67044	Canola	cytosol	0.72	23.53

Protein Annotations

Gene3D:3.20.20.80	MapMan:9.5.2.1	GO:A0A078HHL6	UniProt:A0A078HHL6	EnsemblPlants:CDY37226	ProteinID:CDY37226
ProteinID:CDY37226.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00063713001	InterPro:Glyco_hydro_1	InterPro:Glyco_hydro_1_AS	InterPro:Glycoside_hydrolase_SF
PFAM:PF00232	PRINTS:PR00131	ScanProsite:PS00572	PFscan:PS51257	PANTHER:PTHR10353	PANTHER:PTHR10353:SF44
SUPFAM:SSF51445	SignalP:SignalP-noTM	UniParc:UPI0004EF2F20	:	:	:

Description

BnaA09g08470DBnaA09g08470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HHL6]

Coordinates

chrLK032395:+:192680..195372

Molecular Weight (calculated)

63053.6 Da

IEP (calculated)

8.710

GRAVY (calculated)

-0.510

Length

553 amino acids

Sequence
(BLAST)

001: MKLHGLALIG FLIAVVSCKA IEECRENEPF TCGNTDQLSS KSFPKDFIFG VASAAYQACY KSTIFDVEGG RGRGLNVWDG FTHRYPEKGG SDLGNGDTTC
101: ESYTRWQKDI DIIDELNATG YRFSFAWSRI IPKGKVSRGV NKGGLEYYHK LIDGLIAKNI TPFVTLFHWD LPQTLQDEYE GFLNRTVIDD FRDYADLCFK
201: EFGGKVKNWI TINQLYTVPT RGYAIGTDAP GRCSPEVDEK CYGGNSSTEP YIVAHNQLLA HAAAVDVYRT KYKFQKGKIG PVMITRWFLP FDKTDQASRD
301: AANRMKEFFL GWFMEPLTKG RYPDIMREIV GSRLPNFTEA EAELVAGSYD FLGLNYYTTQ YAQPKPNPVT WANHTAMMDP GAKLTYNNSR GENLGPLFVK
401: DEKNGNAYYY PKGIYYVMDY FKTKYSNPLI YITENGFSTP GEENRDKAIA DSKRIDYLCS HLCFLRKVIR EKGVNIKGYF AWALGDNYEF CKGFTVRFGL
501: SYVNWTDLND RNLKKSGKWY QSFINGTTKN PAKQDFRRPN LSLRNQKKNL ADA

Best Arabidopsis Sequence Match ( AT5G26000.1 )
(BLAST)

001: MKLLMLAFVF LLALATCKGD EFVCEENEPF TCNQTKLFNS GNFEKGFIFG VASSAYQVEG GRGRGLNVWD SFTHRFPEKG GADLGNGDTT CDSYTLWQKD
101: IDVMDELNST GYRFSIAWSR LLPKGKRSRG VNPGAIKYYN GLIDGLVAKN MTPFVTLFHW DLPQTLQDEY NGFLNKTIVD DFKDYADLCF ELFGDRVKNW
201: ITINQLYTVP TRGYALGTDA PGRCSPKIDV RCPGGNSSTE PYIVAHNQLL AHAAAVDVYR TKYKDDQKGM IGPVMITRWF LPFDHSQESK DATERAKIFF
301: HGWFMGPLTE GKYPDIMREY VGDRLPEFSE TEAALVKGSY DFLGLNYYVT QYAQNNQTIV PSDVHTALMD SRTTLTSKNA TGHAPGPPFN AASYYYPKGI
401: YYVMDYFKTT YGDPLIYVTE NGFSTPGDED FEKATADYKR IDYLCSHLCF LSKVIKEKNV NVKGYFAWSL GDNYEFCNGF TVRFGLSYVD FANITGDRDL
501: KASGKWFQKF INVTDEDSTN QDLLRSSVSS KNRDRKSLAD A

Arabidopsis Description

TGG1TGG1 [Source:UniProtKB/TrEMBL;Acc:A0A178U7L7]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.