CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, vacuole

Predictor Summary:

plastid 1
mitochondrion 3
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, vacuole
Any Predictor:	mitochondrion, plastid, vacuole
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	vacuole
PProwler:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26000.1	CDY32970	AT5G42980.1	15352244
AT5G26000.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72290	Canola	cytosol, mitochondrion, vacuole	63.16	77.42
CDY24999	Canola	cytosol, mitochondrion	55.7	62.56
CDY29614	Canola	cytosol, peroxisome, vacuole	17.54	43.01
CDY04261	Canola	vacuole	67.98	40.68
CDY26308	Canola	cytosol	89.91	37.61
CDY67046	Canola	extracellular	89.47	37.36
CDY71771	Canola	cytosol, vacuole	58.33	36.44
Bra020523.1-P	Field mustard	cytosol	48.25	35.95
CDX90772	Canola	mitochondrion	91.23	35.14
CDY05334	Canola	cytosol	80.7	34.91
CDY22730	Canola	mitochondrion	68.86	34.73
CDY71022	Canola	cytosol	78.51	33.46
CDY37226	Canola	extracellular	79.39	32.73
CDY52022	Canola	cytosol	75.44	32.39
CDY07361	Canola	endoplasmic reticulum	71.05	30.11
AT5G26000.1	Thale cress	endoplasmic reticulum, vacuole	70.61	29.76
CDY22724	Canola	cytosol	71.05	29.67
CDY46331	Canola	endoplasmic reticulum, vacuole	67.98	28.6
CDY39513	Canola	endoplasmic reticulum, vacuole	65.35	28.33
CDY09042	Canola	vacuole	64.47	27.84
CDY09054	Canola	vacuole	59.65	27.64
CDY24995	Canola	cytosol, plastid, vacuole	17.98	12.17
CDY29604	Canola	mitochondrion, plastid, vacuole	2.63	3.57
CDX87822	Canola	plasma membrane	1.75	3.17
CDY46560	Canola	cytosol, vacuole	1.32	3.0
CDY68654	Canola	cytosol	1.75	2.22
CDY65716	Canola	cytosol	0.44	0.74
CDY22731	Canola	cytosol	0.44	0.57
CDY24996	Canola	cytosol	0.44	0.57
CDY52412	Canola	cytosol	0.0	0.0
CDY67044	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY70871	EnsemblPlantsGene:GSBRNA2T00008150001	Gene3D:3.20.20.80	GO:A0A078JZ88	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_1
InterPro:Glycoside_hydrolase_SF	PANTHER:PTHR10353	PANTHER:PTHR10353:SF44	PFAM:PF00232	ProteinID:CDY70871	ProteinID:CDY70871.1
SUPFAM:SSF51445	UniParc:UPI0004EE41C4	UniProt:A0A078JZ88	MapMan:50.3.2	:	:

Description

BnaAnng35370DBnaAnng35370D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JZ88]

Coordinates

chrLK043606:-:101..1242

Molecular Weight (calculated)

25937.7 Da

IEP (calculated)

8.207

GRAVY (calculated)

-0.482

Length

228 amino acids

Sequence
(BLAST)

001: TSSSVLHLLL TRHIEGGRGR GVNIWDGFSH RYPEKSGSDL KNGDTTCESY TRWQKDVDVM GELNATGYRF SFAWSRIIPK GKVSRGVNQG GLDYYHKLLD
101: ALLEKNITPF VTLFHWDLPQ TLQDEYEGFL DRQIIQDFKD YADLCFKEFG GKVKHWITIN QLYTVPTRGY AVGTDAPGRC SPMVDTKHRC YGGNSSTEPY
201: IVAHNQLLAH ATVVDLYRTK YKVSCLNT

Best Arabidopsis Sequence Match ( AT5G25980.1 )
(BLAST)

001: MQHNTYIYIL TMKLLGFALA ILLVVATCKP EEEITCEENV PFTCSQTDRF NKQDFESDFI FGVASSAYQI EGGRGRGLNV WDGFTHRYPE KGGADLGNGD
101: TTCDSYRTWQ KDLDVMEELG VKGYRFSFAW SRILPKGKRS RGINEDGINY YSGLIDGLIA RNITPFVTLF HWDLPQSLQD EYEGFLDRTI IDDFKDYADL
201: CFERFGDRVK HWITINQLFT VPTRGYALGT DAPGRCSQWV DKRCYGGDSS TEPYIVAHNQ LLAHATVVDL YRTRYKYQGG KIGPVMITRW FLPYDDTLES
301: KQATWRAKEF FLGWFMEPLT KGKYPYIMRK LVGNRLPKFN STEARLLKGS YDFLGLNYYV TQYAHALDPS PPEKLTAMTD SLANLTSLDA NGQPPGPPFS
401: KGSYYHPRGM LNVMEHFKTK YGDPLIYVTE NGFSTSGGPI PFTEAFHDYN RIDYLCSHLC FLRKAIK

Arabidopsis Description

TGG2Myrosinase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5C2]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.