Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G26000.1 | CDY32970 | AT5G42980.1 | 15352244 |
| AT5G26000.1 | CDY43592 | AT5G42980.1 | 15352244 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24996 | Canola | cytosol | 64.2 | 64.2 |
| CDY65716 | Canola | cytosol | 48.86 | 63.24 |
| CDY68654 | Canola | cytosol | 63.07 | 61.67 |
| CDY52412 | Canola | cytosol | 28.98 | 57.3 |
| Bra038094.1-P | Field mustard | cytosol | 98.86 | 40.47 |
| CDY46560 | Canola | cytosol, vacuole | 22.16 | 39.0 |
| CDY24995 | Canola | cytosol, plastid, vacuole | 67.61 | 35.31 |
| CDY29604 | Canola | mitochondrion, plastid, vacuole | 32.39 | 33.93 |
| CDX87822 | Canola | plasma membrane | 23.86 | 33.33 |
| CDY09054 | Canola | vacuole | 90.91 | 32.52 |
| CDY09042 | Canola | vacuole | 77.27 | 25.76 |
| CDY39513 | Canola | endoplasmic reticulum, vacuole | 76.14 | 25.48 |
| CDY22724 | Canola | cytosol | 77.27 | 24.91 |
| CDY46331 | Canola | endoplasmic reticulum, vacuole | 76.7 | 24.91 |
| CDY67044 | Canola | cytosol | 2.27 | 23.53 |
| CDY05334 | Canola | cytosol | 67.61 | 22.58 |
| CDY67046 | Canola | extracellular | 68.18 | 21.98 |
| CDY26308 | Canola | cytosol | 67.61 | 21.83 |
| AT5G26000.1 | Thale cress | endoplasmic reticulum, vacuole | 64.77 | 21.07 |
| CDY37226 | Canola | extracellular | 65.34 | 20.8 |
| CDY07361 | Canola | endoplasmic reticulum | 61.36 | 20.07 |
| CDY52022 | Canola | cytosol | 59.66 | 19.77 |
| CDY71022 | Canola | cytosol | 56.82 | 18.69 |
| CDY71771 | Canola | cytosol, vacuole | 14.77 | 7.12 |
| CDX90772 | Canola | mitochondrion | 15.91 | 4.73 |
| CDY22730 | Canola | mitochondrion | 9.66 | 3.76 |
| CDY04261 | Canola | vacuole | 7.39 | 3.41 |
| CDY29614 | Canola | cytosol, peroxisome, vacuole | 1.7 | 3.23 |
| CDY24999 | Canola | cytosol, mitochondrion | 1.14 | 0.99 |
| CDY70871 | Canola | mitochondrion, vacuole | 0.57 | 0.44 |
| CDY72290 | Canola | cytosol, mitochondrion, vacuole | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.20.20.80 | MapMan:50.3.2 | GO:A0A078GBH6 | UniProt:A0A078GBH6 | EnsemblPlants:CDY22731 | ProteinID:CDY22731 |
| ProteinID:CDY22731.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005975 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00021035001 | InterPro:Glyco_hydro_1 | InterPro:Glyco_hydro_1_AS | InterPro:Glycoside_hydrolase_SF |
| PFAM:PF00232 | PRINTS:PR00131 | ScanProsite:PS00572 | PANTHER:PTHR10353 | PANTHER:PTHR10353:SF44 | SUPFAM:SSF51445 |
| UniParc:UPI0004EEBECF | : | : | : | : | : |
Description
BnaA08g05610DBnaA08g05610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GBH6]
Coordinates
chrLK032135:+:116424..117337
Molecular Weight (calculated)
20585.5 Da
IEP (calculated)
8.909
GRAVY (calculated)
-0.530
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MMDAGVTLTY RDINGHAIGP LFTEDKVDAA KNTYYYPEGI SYVMDYFKTK YYNPLIYVTE NGFSTPGDEP HEAAKLDCKR IDYLCSHLYF LSKVIKEKHV
101: NVKGYFAWSL GDNYEFCKGF TVRFGLSYID WNNITDRDLK QSGKWYKKFI ITKDLPKKDF LRSSLTFEKK KKFADA
101: NVKGYFAWSL GDNYEFCKGF TVRFGLSYID WNNITDRDLK QSGKWYKKFI ITKDLPKKDF LRSSLTFEKK KKFADA
001: MQHNTYIYIL TMKLLGFALA ILLVVATCKP EEEITCEENV PFTCSQTDRF NKQDFESDFI FGVASSAYQI EGGRGRGLNV WDGFTHRYPE KGGADLGNGD
101: TTCDSYRTWQ KDLDVMEELG VKGYRFSFAW SRILPKGKRS RGINEDGINY YSGLIDGLIA RNITPFVTLF HWDLPQSLQD EYEGFLDRTI IDDFKDYADL
201: CFERFGDRVK HWITINQLFT VPTRGYALGT DAPGRCSQWV DKRCYGGDSS TEPYIVAHNQ LLAHATVVDL YRTRYKYQGG KIGPVMITRW FLPYDDTLES
301: KQATWRAKEF FLGWFMEPLT KGKYPYIMRK LVGNRLPKFN STEARLLKGS YDFLGLNYYV TQYAHALDPS PPEKLTAMTD SLANLTSLDA NGQPPGPPFS
401: KGSYYHPRGM LNVMEHFKTK YGDPLIYVTE NGFSTSGGPI PFTEAFHDYN RIDYLCSHLC FLRKAIKEKR VNVKGYFVWS LGDNYEFCNG YTVRFGLSYV
501: DFNNVTADRD LKASGLWYQS FLRDTTKNQD ILRSSLPFKN GDRKSLT
101: TTCDSYRTWQ KDLDVMEELG VKGYRFSFAW SRILPKGKRS RGINEDGINY YSGLIDGLIA RNITPFVTLF HWDLPQSLQD EYEGFLDRTI IDDFKDYADL
201: CFERFGDRVK HWITINQLFT VPTRGYALGT DAPGRCSQWV DKRCYGGDSS TEPYIVAHNQ LLAHATVVDL YRTRYKYQGG KIGPVMITRW FLPYDDTLES
301: KQATWRAKEF FLGWFMEPLT KGKYPYIMRK LVGNRLPKFN STEARLLKGS YDFLGLNYYV TQYAHALDPS PPEKLTAMTD SLANLTSLDA NGQPPGPPFS
401: KGSYYHPRGM LNVMEHFKTK YGDPLIYVTE NGFSTSGGPI PFTEAFHDYN RIDYLCSHLC FLRKAIKEKR VNVKGYFVWS LGDNYEFCNG YTVRFGLSYV
501: DFNNVTADRD LKASGLWYQS FLRDTTKNQD ILRSSLPFKN GDRKSLT
Arabidopsis Description
TGG2Myrosinase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5C2]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.