CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26000.1	CDY32970	AT5G42980.1	15352244
AT5G26000.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70871	Canola	mitochondrion, vacuole	34.73	68.86
CDY72290	Canola	cytosol, mitochondrion, vacuole	27.65	67.2
CDY24999	Canola	cytosol, mitochondrion	27.88	62.07
CDY29614	Canola	cytosol, peroxisome, vacuole	12.39	60.22
CDY71771	Canola	cytosol, vacuole	37.61	46.58
CDY04261	Canola	vacuole	38.72	45.93
CDY22724	Canola	cytosol	52.21	43.22
Bra020523.1-P	Field mustard	cytosol	28.98	42.81
CDY09042	Canola	vacuole	49.12	42.05
CDY39513	Canola	endoplasmic reticulum, vacuole	47.57	40.87
CDY46331	Canola	endoplasmic reticulum, vacuole	48.89	40.77
CDY09054	Canola	vacuole	43.81	40.24
CDY71022	Canola	cytosol	46.46	39.25
CDY26308	Canola	cytosol	46.9	38.9
CDY67046	Canola	extracellular	46.46	38.46
CDY37226	Canola	extracellular	46.9	38.34
CDY52022	Canola	cytosol	44.25	37.66
CDY05334	Canola	cytosol	43.81	37.57
AT5G26000.1	Thale cress	endoplasmic reticulum, vacuole	44.25	36.97
CDY07361	Canola	endoplasmic reticulum	43.14	36.25
CDX90772	Canola	mitochondrion	44.25	33.78
CDY24995	Canola	cytosol, plastid, vacuole	17.92	24.04
CDY52412	Canola	cytosol	2.65	13.48
CDY68654	Canola	cytosol	5.31	13.33
CDY67044	Canola	cytosol	0.44	11.76
CDY24996	Canola	cytosol	4.42	11.36
CDY22731	Canola	cytosol	3.76	9.66
CDY65716	Canola	cytosol	2.88	9.56
CDY29604	Canola	mitochondrion, plastid, vacuole	3.32	8.93
CDY46560	Canola	cytosol, vacuole	1.77	8.0
CDX87822	Canola	plasma membrane	1.55	5.56

Protein Annotations

EnsemblPlants:CDY22730	EnsemblPlantsGene:GSBRNA2T00021034001	Gene3D:3.20.20.80	GO:A0A078G8F1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_1
InterPro:Glycoside_hydrolase_SF	PANTHER:PTHR10353	PANTHER:PTHR10353:SF44	PFAM:PF00232	ProteinID:CDY22730	ProteinID:CDY22730.1
SEG:seg	SUPFAM:SSF51445	UniParc:UPI0004EDFB99	UniProt:A0A078G8F1	MapMan:50.3.2	:

Description

BnaA08g05600DBnaA08g05600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G8F1]

Coordinates

chrLK032135:+:100143..116353

Molecular Weight (calculated)

51917.3 Da

IEP (calculated)

7.997

GRAVY (calculated)

-0.462

Length

452 amino acids

Sequence
(BLAST)

001: MRVVAVSSGF KRFVRLVLRL EIEGGVGRGL NVWDGFTHRY PNKSGSDHGN GDTTCDSYSY WEKDIEALVE LNATGYRFSI AWSRIIPRGK RSRGVNQEGV
101: NYYRGLINRL VEKGITPFVT LFHWDLPQAL QDEYEGFLDP QIINDFKDYA DLCFQEFGAN VTNWITINQL YTVPTRGYGF GSDAPGRCSR ALDPTCYAGN
201: SSTEPYIVAH HQLLAHATVV DLYRKNYKHQ GGKIGPVMIT RWFLPYDNND PESKAATERM KEFFLGWYMF TPSESNRVII FKKSYQKHKS KYSKFYIRGV
301: NQEDEYEGFL DPQIINDFKD YADLCFQEFG ANVTNWITIN QLYTVPTRGY GFGSDAPGRC SRALDPTCYA GNSSTEPYIV AHHQLLAHAT VVDLYRKNYK
401: HQGGKIGPVM ITRWFLPYDN NDPESKAATE RMKEFFLGWY MFTPSLQRCV II

Best Arabidopsis Sequence Match ( AT5G25980.1 )
(BLAST)

001: MQHNTYIYIL TMKLLGFALA ILLVVATCKP EEEITCEENV PFTCSQTDRF NKQDFESDFI FGVASSAYQI EGGRGRGLNV WDGFTHRYPE KGGADLGNGD
101: TTCDSYRTWQ KDLDVMEELG VKGYRFSFAW SRILPKGKRS RGINEDGINY YSGLIDGLIA RNITPFVTLF HWDLPQSLQD EYEGFLDRTI IDDFKDYADL
201: CFERFGDRVK HWITINQLFT VPTRGYALGT DAPGRCSQWV DKRCYGGDSS TEPYIVAHNQ LLAHATVVDL YRTRYKYQGG KIGPVMITRW FLPYDDTLES
301: KQATWRAKEF FLGWFMEPLT KGKYPYIMRK LVGNRLPKFN STEARLLKGS YDFLGLNYYV TQYAHALDPS PPEKLTAMTD SLANLTSLDA NGQPPGPPFS
401: KGSYYHPRGM LNVMEHFKTK YGDPLIYVTE NGFSTSGGPI PFTEAFHDYN RIDYLCSHLC FLRKAIK

Arabidopsis Description

TGG2Myrosinase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5C2]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.