Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 7
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G26000.1 | CDY32970 | AT5G42980.1 | 15352244 |
| AT5G26000.1 | CDY43592 | AT5G42980.1 | 15352244 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72290 | Canola | cytosol, mitochondrion, vacuole | 40.16 | 82.26 |
| CDY70871 | Canola | mitochondrion, vacuole | 40.68 | 67.98 |
| CDY07361 | Canola | endoplasmic reticulum | 92.39 | 65.43 |
| CDY52022 | Canola | cytosol | 87.93 | 63.09 |
| CDY24999 | Canola | cytosol, mitochondrion | 30.71 | 57.64 |
| CDY71022 | Canola | cytosol | 78.74 | 56.07 |
| CDY37226 | Canola | extracellular | 79.27 | 54.61 |
| CDY05334 | Canola | cytosol | 73.23 | 52.94 |
| CDY67046 | Canola | extracellular | 73.75 | 51.47 |
| CDY26308 | Canola | cytosol | 72.97 | 51.01 |
| CDY29614 | Canola | cytosol, peroxisome, vacuole | 12.07 | 49.46 |
| CDY71771 | Canola | cytosol, vacuole | 46.46 | 48.49 |
| CDY09042 | Canola | vacuole | 66.93 | 48.3 |
| CDY22724 | Canola | cytosol | 67.19 | 46.89 |
| AT5G26000.1 | Thale cress | endoplasmic reticulum, vacuole | 66.14 | 46.58 |
| CDY39513 | Canola | endoplasmic reticulum, vacuole | 63.52 | 46.01 |
| CDY46331 | Canola | endoplasmic reticulum, vacuole | 64.83 | 45.57 |
| CDX90772 | Canola | mitochondrion | 63.52 | 40.88 |
| CDY09054 | Canola | vacuole | 50.39 | 39.02 |
| CDY22730 | Canola | mitochondrion | 45.93 | 38.72 |
| CDY24995 | Canola | cytosol, plastid, vacuole | 29.66 | 33.53 |
| CDY68654 | Canola | cytosol | 3.67 | 7.78 |
| CDY22731 | Canola | cytosol | 3.41 | 7.39 |
| CDY24996 | Canola | cytosol | 3.15 | 6.82 |
| CDY29604 | Canola | mitochondrion, plastid, vacuole | 2.1 | 4.76 |
| CDX87822 | Canola | plasma membrane | 1.05 | 3.17 |
| CDY46560 | Canola | cytosol, vacuole | 0.52 | 2.0 |
| CDY52412 | Canola | cytosol | 0.0 | 0.0 |
| CDY65716 | Canola | cytosol | 0.0 | 0.0 |
| CDY67044 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.20.20.80 | MapMan:50.3.2 | GO:A0A078ESM9 | EnsemblPlants:CDY04261 | ProteinID:CDY04261 | ProteinID:CDY04261.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00118001001 | InterPro:Glyco_hydro_1 | InterPro:Glycoside_hydrolase_SF | PFAM:PF00232 | PFscan:PS51257 |
| PANTHER:PTHR10353 | PANTHER:PTHR10353:SF44 | SUPFAM:SSF51445 | SignalP:SignalP-noTM | UniParc:UPI0004EDC1BD | SEG:seg |
Description
BnaC06g25540D
Coordinates
chrLK031950:-:730396..732762
Molecular Weight (calculated)
43441.1 Da
IEP (calculated)
8.027
GRAVY (calculated)
-0.297
Length
381 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLRGLVLIV FLLAVVSCKA NGEITCEENE PFTCNNTARL NSKGFPKDFI FGIEGGRGRG LNVWDGFTHR YPEKGGPDLG NGDTTCESYT MWQKDIDILD
101: EMNATGYRFS FAWSRIIPAE GKVSRGVNKG GLKYYHKLID GLIAKNITPF VTLYHWDIPQ TLQDEYQGFL NRQVIDDFRD YADLCFKEFG GKVKNWLTLN
201: QLYTVPTRGY STGADAPEPY IVAHNQLLAH AAVVNLYRTK YRASTWIIGP VMITRWFLPF NETDRASIDA TERMKEFFFG WYMEPLTRGR YPDIMRRMVG
301: SRLPNFTEAE ARLVAGSYDF LGLNYYVGQY VQPAPNPLPV TSERYTAMMD PGTRLTSVNA RGEKIGPLVC MHDLPTRIYC F
101: EMNATGYRFS FAWSRIIPAE GKVSRGVNKG GLKYYHKLID GLIAKNITPF VTLYHWDIPQ TLQDEYQGFL NRQVIDDFRD YADLCFKEFG GKVKNWLTLN
201: QLYTVPTRGY STGADAPEPY IVAHNQLLAH AAVVNLYRTK YRASTWIIGP VMITRWFLPF NETDRASIDA TERMKEFFFG WYMEPLTRGR YPDIMRRMVG
301: SRLPNFTEAE ARLVAGSYDF LGLNYYVGQY VQPAPNPLPV TSERYTAMMD PGTRLTSVNA RGEKIGPLVC MHDLPTRIYC F
001: MQHNTYIYIL TMKLLGFALA ILLVVATCKP EEEITCEENV PFTCSQTDRF NKQDFESDFI FGVASSAYQI EGGRGRGLNV WDGFTHRYPE KGGADLGNGD
101: TTCDSYRTWQ KDLDVMEELG VKGYRFSFAW SRILPKGKRS RGINEDGINY YSGLIDGLIA RNITPFVTLF HWDLPQSLQD EYEGFLDRTI IDDFKDYADL
201: CFERFGDRVK HWITINQLFT VPTRGYALGT DAPGRCSQWV DKRCYGGDSS TEPYIVAHNQ LLAHATVVDL YRTRYKYQGG KIGPVMITRW FLPYDDTLES
301: KQATWRAKEF FLGWFMEPLT KGKYPYIMRK LVGNRLPKFN STEARLLKGS YDFLGLNYYV TQYAHALDPS PPEKLTAMTD SLANLTSLDA NGQPPGPPFS
401: KGSYYHPRGM LNVMEHFKTK YGDPLIYVTE NGFSTSGGPI PFTEAFHDYN RIDYLCSHLC FLRKAIK
101: TTCDSYRTWQ KDLDVMEELG VKGYRFSFAW SRILPKGKRS RGINEDGINY YSGLIDGLIA RNITPFVTLF HWDLPQSLQD EYEGFLDRTI IDDFKDYADL
201: CFERFGDRVK HWITINQLFT VPTRGYALGT DAPGRCSQWV DKRCYGGDSS TEPYIVAHNQ LLAHATVVDL YRTRYKYQGG KIGPVMITRW FLPYDDTLES
301: KQATWRAKEF FLGWFMEPLT KGKYPYIMRK LVGNRLPKFN STEARLLKGS YDFLGLNYYV TQYAHALDPS PPEKLTAMTD SLANLTSLDA NGQPPGPPFS
401: KGSYYHPRGM LNVMEHFKTK YGDPLIYVTE NGFSTSGGPI PFTEAFHDYN RIDYLCSHLC FLRKAIK
Arabidopsis Description
TGG2Myrosinase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5C2]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.