CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 26746009

msms PMID: 26746009 doi

S Chen, Y Luo, G Ding, F Xu

National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China. Electronic address: fangsenxu@mail.hzau.edu.cn., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China; Key Laboratory of Agricultural Biotechnology of Liaoning Province, College of Biological Science and Technology, Shenyang Agricultural University, Shenyang 110866, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46560	Canola	cytosol, vacuole	57.94	73.0
CDY29604	Canola	mitochondrion, plastid, vacuole	69.84	52.38
CDY65716	Canola	cytosol	34.92	32.35
CDY52412	Canola	cytosol	20.63	29.21
CDY24996	Canola	cytosol	34.13	24.43
CDY68654	Canola	cytosol	34.13	23.89
CDY22731	Canola	cytosol	33.33	23.86
CDY67044	Canola	cytosol	3.17	23.53
Bra014287.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	69.84	17.46
AT1G47600.1	Thale cress	endoplasmic reticulum, vacuole	69.05	17.03
CDY24995	Canola	cytosol, plastid, vacuole	36.51	13.65
CDY09054	Canola	vacuole	36.51	9.35
CDY52022	Canola	cytosol	38.1	9.04
CDY05334	Canola	cytosol	37.3	8.92
CDY37226	Canola	extracellular	38.89	8.86
CDY26308	Canola	cytosol	38.1	8.81
CDY71022	Canola	cytosol	37.3	8.79
CDY07361	Canola	endoplasmic reticulum	37.3	8.74
CDY67046	Canola	extracellular	37.3	8.61
CDY39513	Canola	endoplasmic reticulum, vacuole	35.71	8.56
CDY46331	Canola	endoplasmic reticulum, vacuole	36.51	8.49
CDY09042	Canola	vacuole	34.92	8.33
CDY22724	Canola	cytosol	34.92	8.06
CDY71771	Canola	cytosol, vacuole	7.94	2.74
CDX90772	Canola	mitochondrion	11.9	2.53
CDY29614	Canola	cytosol, peroxisome, vacuole	1.59	2.15
CDY70871	Canola	mitochondrion, vacuole	3.17	1.75
CDY22730	Canola	mitochondrion	5.56	1.55
CDY24999	Canola	cytosol, mitochondrion	2.38	1.48
CDY04261	Canola	vacuole	3.17	1.05
CDY72290	Canola	cytosol, mitochondrion, vacuole	0.79	0.54

Protein Annotations

EnsemblPlants:CDX87822	EnsemblPlantsGene:GSBRNA2T00146975001	Gene3D:3.20.20.80	GO:A0A078DFN1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_1
InterPro:Glycoside_hydrolase_SF	PANTHER:PTHR10353	PANTHER:PTHR10353:SF44	PFAM:PF00232	PRINTS:PR00131	ProteinID:CDX87822
ProteinID:CDX87822.1	SUPFAM:SSF51445	UniParc:UPI0004EED7AE	MapMan:50.3.2	:	:

Description

BnaC06g08840D

Coordinates

chrLK031852:+:311640..312564

Molecular Weight (calculated)

14237.0 Da

IEP (calculated)

8.937

GRAVY (calculated)

-0.314

Length

126 amino acids

Sequence
(BLAST)

001: MKPSPLQKIK SKSKTCLLAK LVSSRNPLTY ITENVADLDT GNLTLPDALA DNGRIQNHCS HLSCLKCSIN DGFSVAGYFA WSLMDNYEFG NGYTLWFGMN
101: WVNFTNPADG REKTSRKWFS MFIIKQ

Best Arabidopsis Sequence Match ( AT1G47600.1 )
(BLAST)

001: MAIPKAHYSL AVLVLLFVVV SSSQKVCNPE CKAKEPFHCD NTHAFNRTGF PRNFTFGAAT SAYQIEGAAH RALNGWDYFT HRYPEKVPDR SSGDLACDSY
101: DLYKDDVKLL KRMNVQAYRL SIAWSRVLPK GRLTGGVDEN GITYYNNLIN ELKANGIEPY VTIFHWDVPQ TLEDEYGGFL STRIVEDYTN YAELLFQRFG
201: DRVKFWITLN QPFSLATKGY GDGSYPPGRC TGCELGGDSG VEPYTVAHNQ LLAHAKTVSL YRKRYQKFQG GKIGTTLIGR WFAPLNEFSE LDKAAAKRAF
301: DFFVGWFLDP LVYGKYPTIM REMVGDRLPE FTPEQSALVK GSLDFLGLNY YVTQYATDAP PPTQLNAITD ARVTLGFYRN GVPIGVVAPS FVYYPPGFRQ
401: ILNYIKDNYK NPLTYITENG VADLDLGNVT LATALADNGR IQNHCSHLSC LKCAMKDGCN VAGYFAWSLM DNYEFGNGYT LRFGMNWVNF TNPADRKEKA
501: SGKWFSKFLA K

Arabidopsis Description

TGG4Myrosinase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GRX1]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.