CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26000.1	CDY32970	AT5G42980.1	15352244
AT5G26000.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39513	Canola	endoplasmic reticulum, vacuole	95.02	97.91
Bra023838.1-P	Field mustard	endoplasmic reticulum, vacuole	92.44	97.28
CDY22724	Canola	cytosol	82.47	81.87
CDY09042	Canola	vacuole	79.52	81.63
CDY09054	Canola	vacuole	69.74	76.83
CDY22731	Canola	cytosol	24.91	76.7
CDY72290	Canola	cytosol, mitochondrion, vacuole	23.99	69.89
CDY26308	Canola	cytosol	69.74	69.36
CDY67046	Canola	extracellular	69.19	68.68
CDY52022	Canola	cytosol	66.97	68.36
CDY70871	Canola	mitochondrion, vacuole	28.6	67.98
CDY29614	Canola	cytosol, peroxisome, vacuole	11.62	67.74
CDY07361	Canola	endoplasmic reticulum	66.24	66.73
AT5G26000.1	Thale cress	endoplasmic reticulum, vacuole	66.42	66.54
CDY05334	Canola	cytosol	64.39	66.22
CDY37226	Canola	extracellular	66.97	65.64
CDY71022	Canola	cytosol	64.02	64.86
CDY04261	Canola	vacuole	45.57	64.83
CDY65716	Canola	cytosol	16.05	63.97
CDY24995	Canola	cytosol, plastid, vacuole	39.48	63.5
CDY24999	Canola	cytosol, mitochondrion	23.43	62.56
CDY24996	Canola	cytosol	19.74	60.8
CDY68654	Canola	cytosol	19.93	60.0
CDY71771	Canola	cytosol, vacuole	38.56	57.26
CDY52412	Canola	cytosol	8.67	52.81
CDY22730	Canola	mitochondrion	40.77	48.89
CDX90772	Canola	mitochondrion	46.68	42.74
CDY46560	Canola	cytosol, vacuole	7.56	41.0
CDY29604	Canola	mitochondrion, plastid, vacuole	11.62	37.5
CDX87822	Canola	plasma membrane	8.49	36.51
CDY67044	Canola	cytosol	0.74	23.53

Protein Annotations

Gene3D:3.20.20.80	MapMan:9.5.2.1	GO:A0A078I8X2	UniProt:A0A078I8X2	EnsemblPlants:CDY46331	ProteinID:CDY46331
ProteinID:CDY46331.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00083741001	InterPro:Glyco_hydro_1	InterPro:Glyco_hydro_1_AS	InterPro:Glycoside_hydrolase_SF
PFAM:PF00232	PRINTS:PR00131	ScanProsite:PS00572	PANTHER:PTHR10353	PANTHER:PTHR10353:SF44	SUPFAM:SSF51445
SignalP:SignalP-noTM	UniParc:UPI0004EF4B7E	SEG:seg	:	:	:

Description

BnaC01g31650DBnaC01g31650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I8X2]

Coordinates

chrLK032661:+:169076..175584

Molecular Weight (calculated)

62034.8 Da

IEP (calculated)

6.460

GRAVY (calculated)

-0.499

Length

542 amino acids

Sequence
(BLAST)

001: MKHIWLTLAF LLALATCKAD EEINCEENLP FTCGQTDRFN STSFEKDFIF GLASSAYQAC SINRGVNVWD GFTHRFPHKA GPDHGNGDTT CNSYSYWEKD
101: IEVMDELKAT GYRFSIAWSR VIPRGKRSRG VHQGGINYYH GLINGLIDKG ITPLVTLFHW DLPQVLQDDY EGFLDPQIID DFRDFADLCF EEYGDKVKHW
201: FTINQLYSVP TRGYGLGSDA PGRCSPKVDS TCYAGNSSTE PYIVAHNQLL AHATVVDLYR TKYKHQGGKI GPVMITRWFL PYNDTDPDSI AATERMKEFF
301: LGWYMGPLTN GTYPQIMIDT VGERLPSFTP EESKLVKGSY DFLGLNYYFT QYVQPSPNHV DSDGHTAMMD AGTRLTYRNA SNHAIGPVFT EHKDDETKNT
401: YYYPKGIYYV MDHFKTNYNN PVIYITENGF STSGDETREE AKFDYRRIDY LCSHLCFLSK VIKETGVKVK GYCAWSLGDN YEFGQGFTVR FGLTYIDWNN
501: VTDRDLKESG KWYKKFIATK NLAKPNFLRS SLTFEKKKFA DA

Best Arabidopsis Sequence Match ( AT5G25980.1 )
(BLAST)

001: MQHNTYIYIL TMKLLGFALA ILLVVATCKP EEEITCEENV PFTCSQTDRF NKQDFESDFI FGVASSAYQI EGGRGRGLNV WDGFTHRYPE KGGADLGNGD
101: TTCDSYRTWQ KDLDVMEELG VKGYRFSFAW SRILPKGKRS RGINEDGINY YSGLIDGLIA RNITPFVTLF HWDLPQSLQD EYEGFLDRTI IDDFKDYADL
201: CFERFGDRVK HWITINQLFT VPTRGYALGT DAPGRCSQWV DKRCYGGDSS TEPYIVAHNQ LLAHATVVDL YRTRYKYQGG KIGPVMITRW FLPYDDTLES
301: KQATWRAKEF FLGWFMEPLT KGKYPYIMRK LVGNRLPKFN STEARLLKGS YDFLGLNYYV TQYAHALDPS PPEKLTAMTD SLANLTSLDA NGQPPGPPFS
401: KGSYYHPRGM LNVMEHFKTK YGDPLIYVTE NGFSTSGGPI PFTEAFHDYN RIDYLCSHLC FLRKAIK

Arabidopsis Description

TGG2Myrosinase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5C2]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.