CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26000.1	CDY32970	AT5G42980.1	15352244
AT5G26000.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023838.1-P	Field mustard	endoplasmic reticulum, vacuole	95.82	97.86
CDY46331	Canola	endoplasmic reticulum, vacuole	97.91	95.02
CDY22724	Canola	cytosol	83.08	80.04
CDY09042	Canola	vacuole	80.04	79.73
CDY22731	Canola	cytosol	25.48	76.14
CDY09054	Canola	vacuole	69.2	73.98
CDY72290	Canola	cytosol, mitochondrion, vacuole	24.71	69.89
CDY26308	Canola	cytosol	69.58	67.16
CDY67046	Canola	extracellular	69.2	66.67
CDY05334	Canola	cytosol	66.35	66.22
CDY52022	Canola	cytosol	66.73	66.1
CDY07361	Canola	endoplasmic reticulum	66.92	65.43
CDY70871	Canola	mitochondrion, vacuole	28.33	65.35
AT5G26000.1	Thale cress	endoplasmic reticulum, vacuole	66.16	64.33
CDY04261	Canola	vacuole	46.01	63.52
CDY37226	Canola	extracellular	66.54	63.29
CDY65716	Canola	cytosol	16.35	63.24
CDY71022	Canola	cytosol	63.69	62.62
CDY24999	Canola	cytosol, mitochondrion	24.14	62.56
CDY24996	Canola	cytosol	20.53	61.36
CDY24995	Canola	cytosol, plastid, vacuole	39.16	61.13
CDY68654	Canola	cytosol	20.72	60.56
CDY29614	Canola	cytosol, peroxisome, vacuole	10.27	58.06
CDY71771	Canola	cytosol, vacuole	38.59	55.62
CDY52412	Canola	cytosol	8.94	52.81
CDY22730	Canola	mitochondrion	40.87	47.57
CDX90772	Canola	mitochondrion	46.96	41.72
CDY46560	Canola	cytosol, vacuole	7.79	41.0
CDY29604	Canola	mitochondrion, plastid, vacuole	11.79	36.9
CDX87822	Canola	plasma membrane	8.56	35.71
CDY67044	Canola	cytosol	0.76	23.53

Protein Annotations

Gene3D:3.20.20.80	MapMan:9.5.2.1	GO:A0A078HRZ9	UniProt:A0A078HRZ9	EnsemblPlants:CDY39513	ProteinID:CDY39513
ProteinID:CDY39513.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00068030001	InterPro:Glyco_hydro_1	InterPro:Glyco_hydro_1_AS	InterPro:Glycoside_hydrolase_SF
PFAM:PF00232	PRINTS:PR00131	ScanProsite:PS00572	PANTHER:PTHR10353	PANTHER:PTHR10353:SF44	SUPFAM:SSF51445
SignalP:SignalP-noTM	UniParc:UPI0004EEDB40	SEG:seg	:	:	:

Description

BnaA01g24750DBnaA01g24750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HRZ9]

Coordinates

chrLK032449:-:313341..316142

Molecular Weight (calculated)

60253.8 Da

IEP (calculated)

6.167

GRAVY (calculated)

-0.483

Length

526 amino acids

Sequence
(BLAST)

001: MKHLWLTLAF LLALATCKAD EEITCEENLP FTCGQTDRFN SSSFEKDFIF GSINRGVNVW DGFTHRFPHK AGPDHGNGDT TCNSYSYWEK DIEVMDELKA
101: TGYRFSIAWS RIIPRGKRSR GVHQGGINYY HGLINGLIEK GITPLVTLFH WDLPQVLQDD YEGFLDPQII DDFRDFADLC FEEYGDKVKH WFTINQLYSV
201: PTRGYGLGSD APGRCSPKVD STCYAGNSST EPYIVAHNQL LAHATVHQGG KIGPVMITRW FLPYNDTDPD SIAATERMKE FFLGWYMYMG PLTNGTYPQI
301: MIDTVGERLP SFTPEESKLV KGSYDFLGLN YYFTQYVQPS PNHVDSDGHT AMMDAGTRLT YRNASNHAIG PVFTEHKDDE TKNTYYYPKG IYYVMDHFKT
401: NYNDPVIYIT ENGFSTSGDE TREEAKFDYR RIDYLCSHLC FLSKVIKETG VKVKGYCAWS LGDNYEFGLG FTVRFGLTYI DWNNVTDRDL KESGKWYKKF
501: IATKNLAKPN FLRSSLTFEK KKFADA

Best Arabidopsis Sequence Match ( AT5G25980.1 )
(BLAST)

001: MQHNTYIYIL TMKLLGFALA ILLVVATCKP EEEITCEENV PFTCSQTDRF NKQDFESDFI FGVASSAYQI EGGRGRGLNV WDGFTHRYPE KGGADLGNGD
101: TTCDSYRTWQ KDLDVMEELG VKGYRFSFAW SRILPKGKRS RGINEDGINY YSGLIDGLIA RNITPFVTLF HWDLPQSLQD EYEGFLDRTI IDDFKDYADL
201: CFERFGDRVK HWITINQLFT VPTRGYALGT DAPGRCSQWV DKRCYGGDSS TEPYIVAHNQ LLAHATVVDL YRTRYKYQGG KIGPVMITRW FLPYDDTLES
301: KQATWRAKEF FLGWFMEPLT KGKYPYIMRK LVGNRLPKFN STEARLLKGS YDFLGLNYYV TQYAHALDPS PPEKLTAMTD SLANLTSLDA NGQPPGPPFS
401: KGSYYHPRGM LNVMEHFKTK YGDPLIYVTE NGFSTSGGPI PFTEAFHDYN RIDYLCSHLC FLRKAIK

Arabidopsis Description

TGG2Myrosinase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5C2]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.