CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 7
vacuole 6
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26000.1	CDY32970	AT5G42980.1	15352244
AT5G26000.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004012.1-P	Field mustard	endoplasmic reticulum	99.26	99.26
CDY65716	Canola	cytosol	24.91	98.53
CDY04261	Canola	vacuole	65.43	92.39
CDY72290	Canola	cytosol, mitochondrion, vacuole	29.93	86.56
CDY52022	Canola	cytosol	84.39	85.5
CDY37226	Canola	extracellular	79.55	77.4
CDY71022	Canola	cytosol	76.21	76.64
CDY67046	Canola	extracellular	75.65	74.54
CDY26308	Canola	cytosol	75.46	74.5
CDY05334	Canola	cytosol	71.75	73.24
CDY70871	Canola	mitochondrion, vacuole	30.11	71.05
CDY24996	Canola	cytosol	22.68	69.32
CDY22724	Canola	cytosol	69.52	68.5
CDY68654	Canola	cytosol	22.86	68.33
CDY24995	Canola	cytosol, plastid, vacuole	42.57	67.95
CDY09042	Canola	vacuole	66.54	67.8
AT5G26000.1	Thale cress	endoplasmic reticulum, vacuole	68.03	67.65
CDY39513	Canola	endoplasmic reticulum, vacuole	65.43	66.92
CDY46331	Canola	endoplasmic reticulum, vacuole	66.73	66.24
CDY24999	Canola	cytosol, mitochondrion	24.91	66.01
CDY52412	Canola	cytosol	10.59	64.04
CDY09054	Canola	vacuole	56.69	61.99
CDY22731	Canola	cytosol	20.07	61.36
CDY29614	Canola	cytosol, peroxisome, vacuole	10.04	58.06
CDY71771	Canola	cytosol, vacuole	36.43	53.7
CDX90772	Canola	mitochondrion	49.44	44.93
CDY22730	Canola	mitochondrion	36.25	43.14
CDY46560	Canola	cytosol, vacuole	7.99	43.0
CDX87822	Canola	plasma membrane	8.74	37.3
CDY29604	Canola	mitochondrion, plastid, vacuole	11.34	36.31
CDY67044	Canola	cytosol	0.74	23.53

Protein Annotations

Gene3D:3.20.20.80	MapMan:9.5.2.1	GO:A0A078F1S8	UniProt:A0A078F1S8	EnsemblPlants:CDY07361	ProteinID:CDY07361
ProteinID:CDY07361.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00124323001	InterPro:Glyco_hydro_1	InterPro:Glycoside_hydrolase_SF	PFAM:PF00232
PRINTS:PR00131	PFscan:PS51257	PANTHER:PTHR10353	PANTHER:PTHR10353:SF44	SUPFAM:SSF51445	SignalP:SignalP-noTM
UniParc:UPI0004EEED6B	:	:	:	:	:

Description

BnaA07g24400DBnaA07g24400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F1S8]

Coordinates

chrLK031978:+:186758..191541

Molecular Weight (calculated)

61505.0 Da

IEP (calculated)

8.894

GRAVY (calculated)

-0.426

Length

538 amino acids

Sequence
(BLAST)

001: MKLRGLVLIV FLLAVVSCKA NGEITCEENE PFTCNNTARL NSKGFPKDFI FGVASSAYQA CGRGRGLNVW DGFTHRYPEK GGPDLGNGDT TCESYTKWQK
101: DIDILDEMNA TGYRFSFAWS RIIPAEGKVS RGVNKGGLKY YHKLIDGLIA KNITPFVTLY HWDIPQTLQD EYQGFLNRQV IDDFRDYADL CFKEFGGKVK
201: NWLTLNQLYT VPTRGYSTGS DAPGRCSPKV DERCYGGNSS TEPYIVAHNQ LLAHAAVFQR GIIGPVMITR WFLPFNETDR ASIDATERMK EFFFGWYMEP
301: LTRGRYPDIM RRMVGSRLPN FTEAEARLVA GSYDFLGLNY YVGQYVQPAP NPLPVTSERY TAMMDPGTTL TSVNARGEKI GPLFEDFQGS RIYYYPKGIY
401: YVMDHFRTRY RNPLIYVTEN GFTTPASENR PEAVADSKRI DYLCSHLCFL RKVIREKRVN IKGYFAWSLG DNYEFAKGFA VRFGLTYVNW TDVSDRNLKD
501: SGRWYQRFIN VTSKNTANED FLRSSLSFKN KMKTLADA

Best Arabidopsis Sequence Match ( AT5G26000.1 )
(BLAST)

001: MKLLMLAFVF LLALATCKGD EFVCEENEPF TCNQTKLFNS GNFEKGFIFG VASSAYQVEG GRGRGLNVWD SFTHRFPEKG GADLGNGDTT CDSYTLWQKD
101: IDVMDELNST GYRFSIAWSR LLPKGKRSRG VNPGAIKYYN GLIDGLVAKN MTPFVTLFHW DLPQTLQDEY NGFLNKTIVD DFKDYADLCF ELFGDRVKNW
201: ITINQLYTVP TRGYALGTDA PGRCSPKIDV RCPGGNSSTE PYIVAHNQLL AHAAAVDVYR TKYKDDQKGM IGPVMITRWF LPFDHSQESK DATERAKIFF
301: HGWFMGPLTE GKYPDIMREY VGDRLPEFSE TEAALVKGSY DFLGLNYYVT QYAQNNQTIV PSDVHTALMD SRTTLTSKNA TGHAPGPPFN AASYYYPKGI
401: YYVMDYFKTT YGDPLIYVTE NGFSTPGDED FEKATADYKR IDYLCSHLCF LSKVIKEKNV NVKGYFAWSL GDNYEFCNGF TVRFGLSYVD FANITGDRDL
501: KASGKWFQKF INVTDEDSTN QDLLRSSVSS KNRDRKSLAD A

Arabidopsis Description

TGG1TGG1 [Source:UniProtKB/TrEMBL;Acc:A0A178U7L7]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.