CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	endoplasmic reticulum

cytosol: 16847873
extracellular: 28052459
extracellular: 29364282

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

msms PMID: 29364282 doi

S Pahlow, A Ostendorp, L Krüßel, J Kehr

Molecular Plant Genetics, Universität Hamburg., Molecular Plant Genetics, Universität Hamburg; julia.kehr@uni-hamburg.de.

msms PMID: 16847873 doi

V Katavic, GK Agrawal, M Hajduch, SL Harris, JJ Thelen

University of Missouri-Columbia, Department of Biochemistry, Columbia 65211, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26000.1	CDY32970	AT5G42980.1	15352244
AT5G26000.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26308	Canola	cytosol	97.25	97.43
CDY05334	Canola	cytosol	92.31	95.64
CDY24996	Canola	cytosol	30.77	95.45
CDY68654	Canola	cytosol	30.77	93.33
CDY24995	Canola	cytosol, plastid, vacuole	57.14	92.58
Bra020549.1-P	Field mustard	cytosol	43.77	91.22
CDY70871	Canola	mitochondrion, vacuole	37.36	89.47
CDY29614	Canola	cytosol, peroxisome, vacuole	14.47	84.95
CDY24999	Canola	cytosol, mitochondrion	30.4	81.77
CDY37226	Canola	extracellular	81.32	80.29
CDY71022	Canola	cytosol	76.92	78.5
CDY72290	Canola	cytosol, mitochondrion, vacuole	26.56	77.96
CDY52022	Canola	cytosol	74.73	76.84
CDY07361	Canola	endoplasmic reticulum	74.54	75.65
CDY04261	Canola	vacuole	51.47	73.75
CDY65716	Canola	cytosol	18.13	72.79
CDY22724	Canola	cytosol	71.79	71.79
AT5G26000.1	Thale cress	endoplasmic reticulum, vacuole	70.51	71.16
CDY09042	Canola	vacuole	68.68	71.02
CDY52412	Canola	cytosol	11.54	70.79
CDY39513	Canola	endoplasmic reticulum, vacuole	66.67	69.2
CDY46331	Canola	endoplasmic reticulum, vacuole	68.68	69.19
CDY22731	Canola	cytosol	21.98	68.18
CDY09054	Canola	vacuole	60.07	66.67
CDY71771	Canola	cytosol, vacuole	39.93	59.73
CDX90772	Canola	mitochondrion	62.27	57.43
CDY22730	Canola	mitochondrion	38.46	46.46
CDY46560	Canola	cytosol, vacuole	8.24	45.0
CDY29604	Canola	mitochondrion, plastid, vacuole	11.54	37.5
CDX87822	Canola	plasma membrane	8.61	37.3
CDY67044	Canola	cytosol	0.73	23.53

Protein Annotations

Gene3D:3.20.20.80	MapMan:9.5.2.1	GO:A0A078JMQ2	UniProt:A0A078JMQ2	EnsemblPlants:CDY67046	ProteinID:CDY67046
ProteinID:CDY67046.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	GO:GO:0019137	GO:GO:0046872	GO:GO:0102799
EnsemblPlantsGene:GSBRNA2T00058697001	InterPro:Glyco_hydro_1	InterPro:Glyco_hydro_1_AS	InterPro:Glycoside_hydrolase_SF	PFAM:PF00232	PRINTS:PR00131
ScanProsite:PS00572	PFscan:PS51257	PANTHER:PTHR10353	PANTHER:PTHR10353:SF44	SUPFAM:SSF51445	SignalP:SignalP-noTM
UniParc:UPI0004EE5F5E	SEG:seg	:	:	:	:

Description

BnaCnng53320DBnaCnng53320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JMQ2]

Coordinates

chrLK035701:-:5510..8240

Molecular Weight (calculated)

62625.9 Da

IEP (calculated)

7.263

GRAVY (calculated)

-0.486

Length

546 amino acids

Sequence
(BLAST)

001: MKLLHGLALV FLLAAASCKA DEEITCEENN PFTCSNTDIL SSKNFGKDFI FGVASSAYQA WRGRGVNVWD GFSHRYPEKA GSDLKNGDTT CESYTRWQKD
101: VDVMGELNAT GYRFSFAWSR IIPKGKVSRG VNQGGLDYYH KLIDALLEKN ITPFVTLFHW DLPQTLQDEY EGFLDRQIIQ DFKDYADLCF KEFGGKVKHW
201: ITINQLYTVP TRGYAVGTDA PGRCSPMVDT KHRCYGGNSS TEPYIVAHNQ LLAHATVVDL YRTKYKFQKG KIGPVMITRW FLPFDESDPA SIEAAERMNQ
301: FFHGWYMEPL TKGRYPDIMR QIVGSRLPNF TEEEAELVAG SYDFLGLNYY VTQYAQPKPN PYPSETHTAM MDAGVKLTYD NSRGEFLGPL FVEDKVNGNS
401: YYYPKGIYYV MDYFKTKYGD PLIYVTENGF STPSSENREQ AIADYKRIDY LCSHLCFLRK VIKEKGVNVR GYFAWALGDN YEFCKGFTVR FGLSYVNWED
501: LDDRNLKESG KWYQRFINGT VKNAVKQDFL RSSLSSQSQK KRFADA

Best Arabidopsis Sequence Match ( AT5G26000.1 )
(BLAST)

001: MKLLMLAFVF LLALATCKGD EFVCEENEPF TCNQTKLFNS GNFEKGFIFG VASSAYQVEG GRGRGLNVWD SFTHRFPEKG GADLGNGDTT CDSYTLWQKD
101: IDVMDELNST GYRFSIAWSR LLPKGKRSRG VNPGAIKYYN GLIDGLVAKN MTPFVTLFHW DLPQTLQDEY NGFLNKTIVD DFKDYADLCF ELFGDRVKNW
201: ITINQLYTVP TRGYALGTDA PGRCSPKIDV RCPGGNSSTE PYIVAHNQLL AHAAAVDVYR TKYKDDQKGM IGPVMITRWF LPFDHSQESK DATERAKIFF
301: HGWFMGPLTE GKYPDIMREY VGDRLPEFSE TEAALVKGSY DFLGLNYYVT QYAQNNQTIV PSDVHTALMD SRTTLTSKNA TGHAPGPPFN AASYYYPKGI
401: YYVMDYFKTT YGDPLIYVTE NGFSTPGDED FEKATADYKR IDYLCSHLCF LSKVIKEKNV NVKGYFAWSL GDNYEFCNGF TVRFGLSYVD FANITGDRDL
501: KASGKWFQKF INVTDEDSTN QDLLRSSVSS KNRDRKSLAD A

Arabidopsis Description

TGG1TGG1 [Source:UniProtKB/TrEMBL;Acc:A0A178U7L7]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.