Factsheet for Bra020549.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027469.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26000.1	Bra027469.1-P	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032343.1-P	Field mustard	cytosol	75.57	59.1
Bra020523.1-P	Field mustard	cytosol	66.41	56.86
CDY67046	Canola	extracellular	91.22	43.77
Bra036914.1-P	Field mustard	cytosol	50.76	40.67
CDY05334	Canola	cytosol	81.3	40.42
CDY68654	Canola	cytosol	26.72	38.89
Bra038094.1-P	Field mustard	cytosol	63.74	38.84
CDY24996	Canola	cytosol	25.95	38.64
Bra039823.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	78.24	37.14
Bra039825.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	78.24	37.14
Bra016676.1-P	Field mustard	endoplasmic reticulum, vacuole	72.9	35.5
Bra039705.1-P	Field mustard	vacuole	73.28	35.29
AT5G26000.1	Thale cress	endoplasmic reticulum, vacuole	72.52	35.12
Bra004012.1-P	Field mustard	endoplasmic reticulum	71.37	34.76
Bra023838.1-P	Field mustard	endoplasmic reticulum, vacuole	67.56	34.37
CDY24995	Canola	cytosol, plastid, vacuole	41.98	32.64
Bra030473.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	45.42	23.11
Bra014287.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	44.27	23.02
Bra020551.1-P	Field mustard	cytosol	1.91	3.91

Protein Annotations

EnsemblPlants:Bra020549.1	EnsemblPlants:Bra020549.1-P	EnsemblPlantsGene:Bra020549	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_1
InterPro:Glyco_hydro_1_AS	InterPro:Glycoside_hydrolase_SF	PANTHER:PTHR10353	PANTHER:PTHR10353:SF44	PFAM:PF00232	ScanProsite:PS00572
SUPFAM:SSF51445	UniParc:UPI0002546C8C	UniProt:M4DVK5	MapMan:50.3.2	:	:

Description

AT5G25980 (E=2e-079) TGG2, BGLU37 | TGG2 (GLUCOSIDE GLUCOHYDROLASE 2); hydrolase, hydrolyzing O-glycosyl compounds / thioglucosidase

Coordinates

chrA02:-:24642954..24646055

Molecular Weight (calculated)

30416.1 Da

IEP (calculated)

7.520

GRAVY (calculated)

-0.498

Length

262 amino acids

Sequence
(BLAST)

001: MQKDVDVMGE LNATGYRFSF AWSRIIPKGK VSRGVNQGGL DYYHKLIDAL LEKNITPFVT LFHWDLPQTL QDEYEGFLDR QIIQDFKDYA DLCFKEFGGK
101: VKHWITINQL YTVPTRGYAI GTDAPGRCSP MVDTKHRCYG GNSSTEPYIV AHNQLLAHAT VVDLYRTKYK FVEDKVNGNS YYYPKGIYYV MDYFKTKYGD
201: PLIYVTENGF STPSSENREQ AIADYKRIDY LCSHLCFLRK VINYIMTSED DEERGKITKF KT

Best Arabidopsis Sequence Match ( AT5G25980.1 )
(BLAST)

001: MQHNTYIYIL TMKLLGFALA ILLVVATCKP EEEITCEENV PFTCSQTDRF NKQDFESDFI FGVASSAYQI EGGRGRGLNV WDGFTHRYPE KGGADLGNGD
101: TTCDSYRTWQ KDLDVMEELG VKGYRFSFAW SRILPKGKRS RGINEDGINY YSGLIDGLIA RNITPFVTLF HWDLPQSLQD EYEGFLDRTI IDDFKDYADL
201: CFERFGDRVK HWITINQLFT VPTRGYALGT DAPGRCSQWV DKRCYGGDSS TEPYIVAHNQ LLAHATVVDL YRTRYKYQGG KIGPVMITRW FLPYDDTLES
301: KQATWRAKEF FLGWFMEPLT KGKYPYIMRK LVGNRLPKFN STEARLLKGS YDFLGLNYYV TQYAHALDPS PPEKLTAMTD SLANLTSLDA NGQPPGPPFS
401: KGSYYHPRGM LNVMEHFKTK YGDPLIYVTE NGFSTSGGPI PFTEAFHDYN RIDYLCSHLC FLRKAIK

Arabidopsis Description

TGG2Myrosinase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5C2]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.